Hi, I am unsure whether this worked: see attached screenshot. Thanks! M
On Fri, Dec 1, 2017 at 4:26 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > yes, it should. You should just be able to do a "put" > > On Fri, 1 Dec 2017, Michelle VanTieghem wrote: > > Hi, >> I am confused by the instructions for the ftp. Once I am logged into the >> ftp and have navigated to the transfer/incoming >> directory, how am I supposed to find / access the file that I would ike >> to send through? Does terminal still recognize my >> working directory before I logged into the ftp? >> >> Thanks! >> Michelle >> >> On Sat, Nov 18, 2017 at 2:54 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> Hi Michelle >> >> probably best to tar and gzip the entire subject directory and ftp >> it to us: >> >> https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange >> >> cheers >> Bruce >> >> On Sat, 18 Nov 2017, Michelle VanTieghem wrote: >> >> Hi, >> Yes I can send you the data - should I just attach the mprage >> file in the email, or is there >> another >> way to share the data with freesurfer? Also, should I send >> one scan or multiple scans? >> >> Thanks, >> Michelle >> >> On Sat, Nov 18, 2017 at 10:37 AM, Bruce Fischl < >> fis...@nmr.mgh.harvard.edu> wrote: >> Hi Michelle >> >> are you doing anything out of the ordinary? Do you want >> to send us a dataset and we will >> take a look? I don't think 6.0 is very different from >> 5.3 in regard to skull stripping, >> although it is probably a bit better >> >> Bruce >> >> On Fri, 17 Nov 2017, Michelle VanTieghem wrote: >> >> Hello, >> I have posted several times about problems with >> skull-stripping with our >> dataset. We have tried gcut >> and multiple other options in other packages >> (AFNI, FSL, ANTS) to remove >> skull from structural >> images in our dataset with little success. >> >> Recently, a colleague suggested this may be due >> to versions: that 6.0 deals >> with skull stripping >> much better than 5.3. >> >> I wanted to ask if indeed this could be the case >> before I go install 6.0 >> and re-run everything in >> my study. >> >> Thank you, >> Michelle >> >> -- >> Michelle VanTieghem >> PhD student in Psychology >> Developmental Affective Neuroscience Lab >> Columbia University >> mrv2...@columbia.edu >> >> >> >> >> The information in this e-mail is intended only for the >> person to whom it is >> addressed. If you believe this e-mail was sent to you in >> error and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was >> sent to you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> >> -- >> Michelle VanTieghem >> PhD student in Psychology >> Developmental Affective Neuroscience Lab >> Columbia University >> mrv2...@columbia.edu >> >> >> >> >> -- >> Michelle VanTieghem >> PhD student in Psychology >> Developmental Affective Neuroscience Lab >> Columbia University >> mrv2...@columbia.edu >> >> -- Michelle VanTieghem PhD student in Psychology Developmental Affective Neuroscience Lab Columbia University mrv2...@columbia.edu
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