My lab doesn't have matlab... I'll work on the label2annot and annotation2label programs.
Thanks, Allie On Wed, Mar 9, 2011 at 2:02 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > we don't have any tools for doing so, but you could do it in matlab > On Wed, > 9 Mar 2011, Allie Rosen wrote: > > > Hi, > > > > Can I modify the colour table of an annotation file? Apparently there is > an > > embedded colour table in annotation files. > > > > Allie > > > > > > > > On Wed, Mar 9, 2011 at 1:07 PM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu>wrote: > > > >> It will eliminate them from the annotation which should mean that those > >> areas should be transparent. > >> doug > >> > >> Allie Rosen wrote: > >> > >>> Hi Doug, > >>> > >>> Thanks for the response. Do those commands make the annotations/labels > >>> transparent? > >>> > >>> Allie > >>> > >>> > >>> > >>> On Tue, Mar 8, 2011 at 10:58 PM, Douglas Greve < > gr...@nmr.mgh.harvard.edu<mailto: > >>> gr...@nmr.mgh.harvard.edu>> wrote: > >>> > >>> I've never used that, but you can use mris_annotation2label to > >>> break the annotation in to individual labels,then use > >>> mris_label2annot to put the ones you want back together. > >>> > >>> doug > >>> > >>> > >>> On 3/8/11 10:13 PM, Allie Rosen wrote: > >>> > >>>> Hi Everyone, > >>>> > >>>> I'm wondering if it is possible to use the "cut" function in > >>>> TkSurfer to delete specific atlas annotations. For example, can I > >>>> create a label of my specific area of interest, inverse the label > >>>> to highlight the rest of the brain, and then either cut out these > >>>> regions or make them transparent? > >>>> > >>>> Can anyone help me out? > >>>> > >>>> Thank you, > >>>> > >>>> Allie Rosen, MSc > >>>> Graduate Student, Department of Neurosurgery > >>>> Toronto Western Hospital 14-327 399 Bathurst St. > >>>> University of Toronto > >>>> _______________________________________________ > >>>> Freesurfer mailing list > >>>> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu > >>>>> > >>>> > >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > >>> > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> > >>> The information in this e-mail is intended only for the person to > >>> whom it is > >>> addressed. If you believe this e-mail was sent to you in error and > >>> the e-mail > >>> contains patient information, please contact the Partners > >>> Compliance HelpLine at > >>> http://www.partners.org/complianceline . If the e-mail was sent to > >>> you in error > >>> but does not contain patient information, please contact the > >>> sender and properly > >>> dispose of the e-mail. > >>> > >>> > >>> > >> -- > >> Douglas N. Greve, Ph.D. > >> MGH-NMR Center > >> > >> gr...@nmr.mgh.harvard.edu > >> Phone Number: 617-724-2358 Fax: 617-726-7422 > >> > >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >> > >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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