we don't have any tools for doing so, but you could do it in matlab On Wed, 9 Mar 2011, Allie Rosen wrote:
> Hi, > > Can I modify the colour table of an annotation file? Apparently there is an > embedded colour table in annotation files. > > Allie > > > > On Wed, Mar 9, 2011 at 1:07 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu>wrote: > >> It will eliminate them from the annotation which should mean that those >> areas should be transparent. >> doug >> >> Allie Rosen wrote: >> >>> Hi Doug, >>> >>> Thanks for the response. Do those commands make the annotations/labels >>> transparent? >>> >>> Allie >>> >>> >>> >>> On Tue, Mar 8, 2011 at 10:58 PM, Douglas Greve >>> <gr...@nmr.mgh.harvard.edu<mailto: >>> gr...@nmr.mgh.harvard.edu>> wrote: >>> >>> I've never used that, but you can use mris_annotation2label to >>> break the annotation in to individual labels,then use >>> mris_label2annot to put the ones you want back together. >>> >>> doug >>> >>> >>> On 3/8/11 10:13 PM, Allie Rosen wrote: >>> >>>> Hi Everyone, >>>> >>>> I'm wondering if it is possible to use the "cut" function in >>>> TkSurfer to delete specific atlas annotations. For example, can I >>>> create a label of my specific area of interest, inverse the label >>>> to highlight the rest of the brain, and then either cut out these >>>> regions or make them transparent? >>>> >>>> Can anyone help me out? >>>> >>>> Thank you, >>>> >>>> Allie Rosen, MSc >>>> Graduate Student, Department of Neurosurgery >>>> Toronto Western Hospital 14-327 399 Bathurst St. >>>> University of Toronto >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>> >>>> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to >>> whom it is >>> addressed. If you believe this e-mail was sent to you in error and >>> the e-mail >>> contains patient information, please contact the Partners >>> Compliance HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to >>> you in error >>> but does not contain patient information, please contact the >>> sender and properly >>> dispose of the e-mail. >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
