You can break the annots into labels, then recombine them with mris_label2annot and spec a color table. Not sure if you can edit it directly in the annot.
doug Allie Rosen wrote: > Hi, > > Can I modify the colour table of an annotation file? Apparently there > is an embedded colour table in annotation files. > > Allie > > > > On Wed, Mar 9, 2011 at 1:07 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > It will eliminate them from the annotation which should mean that > those areas should be transparent. > doug > > Allie Rosen wrote: > > Hi Doug, > > Thanks for the response. Do those commands make the > annotations/labels transparent? > > Allie > > > > On Tue, Mar 8, 2011 at 10:58 PM, Douglas Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > <mailto:gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > I've never used that, but you can use mris_annotation2label to > break the annotation in to individual labels,then use > mris_label2annot to put the ones you want back together. > > doug > > > On 3/8/11 10:13 PM, Allie Rosen wrote: > > Hi Everyone, > > I'm wondering if it is possible to use the "cut" > function in > TkSurfer to delete specific atlas annotations. For > example, can I > create a label of my specific area of interest, inverse > the label > to highlight the rest of the brain, and then either cut > out these > regions or make them transparent? > > Can anyone help me out? > > Thank you, > > Allie Rosen, MSc > Graduate Student, Department of Neurosurgery > Toronto Western Hospital 14-327 399 Bathurst St. > University of Toronto > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the > person to > whom it is > addressed. If you believe this e-mail was sent to you in > error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was > sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
