It will eliminate them from the annotation which should mean that those areas should be transparent. doug
Allie Rosen wrote: > Hi Doug, > > Thanks for the response. Do those commands make the annotations/labels > transparent? > > Allie > > > > On Tue, Mar 8, 2011 at 10:58 PM, Douglas Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > I've never used that, but you can use mris_annotation2label to > break the annotation in to individual labels,then use > mris_label2annot to put the ones you want back together. > > doug > > > On 3/8/11 10:13 PM, Allie Rosen wrote: >> Hi Everyone, >> >> I'm wondering if it is possible to use the "cut" function in >> TkSurfer to delete specific atlas annotations. For example, can I >> create a label of my specific area of interest, inverse the label >> to highlight the rest of the brain, and then either cut out these >> regions or make them transparent? >> >> Can anyone help me out? >> >> Thank you, >> >> Allie Rosen, MSc >> Graduate Student, Department of Neurosurgery >> Toronto Western Hospital 14-327 >> 399 Bathurst St. >> University of Toronto >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
