debian-med

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2021/12/22 [Advent bug squashing] Thanks again to Julien Lamy: Bug#1002203: marked as done (mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity)] Andreas Tille
2021/12/22 Re: RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Steffen Möller
2021/12/22 Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Nilesh Patra
2021/12/22 Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Andreas Tille
2021/12/22 Re: Re: autopkgtest requiring large data sets (pique, hinge) Nilesh Patra
2021/12/22 Re: Re: autopkgtest requiring large data sets (pique, hinge) Lance Lin
2021/12/22 Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Julien Lamy
2021/12/22 Re: RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Andreas Tille
2021/12/22 RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Steffen Möller
2021/12/22 [Advent bug squashing] Thanks to Julien Lamy: Bug#1002134: odil: FTBFS: Value.cpp:269:69: error: wrong number of template arguments (4, should be at least 5) Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002236: marked as done (conda-package-handling: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13)] Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002230: marked as done (Ocaml build error: expression was expected of type) Andreas Tille
2021/12/22 [Advent bug squashing] Bug#1002217: marked as done (gatb-core: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below)] Andreas Tille
2021/12/22 [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Andreas Tille
2021/12/21 [Advent bug squashing] Bug#1002253: marked as done Andreas Tille
2021/12/21 Re: Help with possibly broken ar archive Andreas Tille
2021/12/21 Re: Help with possibly broken ar archive Aaron M. Ucko
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Tony Travis
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Tony Travis
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Steven Robbins
2021/12/21 Help with possibly broken ar archive (Was: Bug#1002253: libatomic-queue: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below) Andreas Tille
2021/12/21 Re: [Help needed] Racon Nilesh Patra
2021/12/21 Re: RFS: r-cran-sparql - dependency for a more typical Med package Andreas Tille
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Nilesh Patra
2021/12/21 [Advent bug squashing] By Lance Lin: Bug#986201: marked as done (fsm-lite: Please provide autopkgtest) Andreas Tille
2021/12/21 Re: autopkgtest requiring large data sets (pique, hinge) Pierre Gruet
2021/12/21 RFS: r-cran-sparql - dependency for a more typical Med package Steffen Möller
2021/12/21 autopkgtest requiring large data sets (pique, hinge) Lance Lin
2021/12/21 Re: Moving python-bioblend to med-team? Steffen Möller
2021/12/21 Re: Acquiring Dental RVG on Linux Mayuresh
2021/12/21 Re: Acquiring Dental RVG on Linux Andreas Tille
2021/12/20 [Advent bug squashing] Bug#995831: marked as done (find_package(charls 2.2.0 REQUIRED) not working) Andreas Tille
2021/12/20 Acquiring Dental RVG on Linux Mayuresh
2021/12/20 [Advent bug squashing] 982383 Done: Confusing patch description Andreas Tille
2021/12/20 [Advent bug squashing] Bug#994286: marked as done (r-bioc-destiny: Orphaned upstream, marked for removal in next BioConductor release) Andreas Tille
2021/12/19 Re: [Help needed] Racon Nilesh Patra
2021/12/19 Re: [Help needed] Racon tony mancill
2021/12/19 Re: [Help needed] Racon Andreas Tille
2021/12/19 [Help needed] Racon Nilesh Patra
2021/12/19 [Advent bug squashing] Bug#1001932: marked as done (smart-open: FTBFS with dpkg-buildpackage -nc/--no-pre-clean) Nilesh Patra
2021/12/19 [Advent bug squashing] Bug#1000224: marked as done (plastimatch: DCMTK was configured to use C++14 features, but your compiler does not or was not configured to provide them.)] Andreas Tille
2021/12/19 Re: Moving python-bioblend to med-team? Andreas Tille
2021/12/19 Moving python-bioblend to med-team? Nilesh Patra
2021/12/18 [Advent bug squashing] Bug#1001657: marked as done (ball: binary-any FTBFS) Andreas Tille
2021/12/18 Re: Scala error when trying to build latest version of pilon Pierre Gruet
2021/12/17 Re: Scala error when trying to build latest version of pilon Andreas Tille
2021/12/17 Re: Scala error when trying to build latest version of pilon Pierre Gruet
2021/12/17 [Advent bug squashing] Bug#977033: marked as done (parallel: Multiple threads on multiple hosts with same home directory fails) Andreas Tille
2021/12/16 Re: Debian Med video conference tomorrow, Friday 2021-12-17 18:00 UTC Andreas Tille
2021/12/16 [Advent bug squashing] Bug#1001614: marked as done (odil: FTBFS on armhf: 91 - MoveSCU_Move (Failed)) Andreas Tille
2021/12/16 [Advent bug squashing] Bug#987287: marked as done (python-bz2file: no longer useful since Python 3.3) Andreas Tille
2021/12/15 [Advent bug squashing] Fwd: Bug#1001681: marked as done (sight: FTBFS in unstable) Pierre Gruet
2021/12/15 [Advent bug squashing] Bug#929700: marked as done (pymol: Deprecation warning during startup) Andreas Tille
2021/12/14 [Advent bug squashing] Bug#935340: marked as done (obitools: Port to Python3 needed) Andreas Tille
2021/12/13 Re: [Advent bug squashing] Bug#988852: marked as done (transdecoder: broken symlink: /usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz -> ../../sample_data/pasa_example/pasa_assemblies.fasta.gz) Andreas Tille
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andreas Tille
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal olivier sallou
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Peter Rice
2021/12/13 [Advent bug squashing]: Bug#985071: marked as done (smalt: native FTBFS with DEB_BUILD_OPTIONS=nocheck) Andreas Tille
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal olivier sallou
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andrius Merkys
2021/12/13 Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andreas Tille
2021/12/13 Re: r-bioc-txdb.hsapiens.ucsc.hg19.knowngene on salsa Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Andreas Tille
2021/12/13 r-bioc-txdb.hsapiens.ucsc.hg19.knowngene on salsa Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Steffen Möller
2021/12/13 [Advent bug squashing] Bug#995409: marked as done (ball: Please build depend on qtwebengine5-dev also on mips64el) Andreas Tille
2021/12/12 Re: [Advent bug squashing] Bug#982365: marked as done (ball: reduce Build-Depends) Nilesh Patra
2021/12/12 [Advent bug squashing] Bug#982365: marked as done (ball: reduce Build-Depends) Andreas Tille
2021/12/12 [Advent bug squashing] Bug#1001535: marked as done (busco: (autopkgtest) needs update for python3.10) Nilesh Patra
2021/12/11 [Advent bug squashing] Close bugs that were not closed in changelogs Andreas Tille
2021/12/11 Re: How to do 32-bit build in AMD64 chroot -- problem with SSE instructions? Andreas Tille
2021/12/11 How to do 32-bit build in AMD64 chroot -- problem with SSE instructions? Steven Robbins
2021/12/11 [Advent bug squashing]: Bug#999632: marked as done (r-bioc-isoformswitchanalyzer FTBFS: ERROR: dependencies ‘DRIMSeq’, ‘tximeta’ are not available) Nilesh Patra
2021/12/11 [Advent bug squashing]: Bug#986555: marked as done (mark one more symbol as optional) Andreas Tille
2021/12/11 [Advent bug squashing] Bug#1001520: marked as done (fastp: FTBFS on riscv64, linked with -lpthread instead of -pthread) Andreas Tille
2021/12/11 Re: Bug#984063: itk libtiff test issues (Was: Bug#984063) Steven Robbins
2021/12/10 [Advent bug squashing] Bug#1001349: marked as done (python-anndata: autopkgtest fail with pandas 1.3: missing openpyxl) Andreas Tille
2021/12/10 [Advent bug squashing] Bug#1001020: marked as done (python-anndata: FTBFS with sklearn 1.0.1-1: ModuleNotFoundError: No module named 'sklearn.utils.testing') Andreas Tille
2021/12/10 Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Andreas Tille
2021/12/10 Re: Any help to get pydicom build welcome Mathieu Malaterre
2021/12/10 Re: Any help to get pydicom build welcome Andreas Tille
2021/12/10 Re: Any help to get pydicom build welcome Mathieu Malaterre
2021/12/10 Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Steffen Möller
2021/12/09 Re: jblas update to 1.2.5? Andreas Tille
2021/12/09 Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Andreas Tille
2021/12/09 [Advent bug squashing] Bug#1001410: marked as done (python-csb: (autopkgtest) needs update for python3.10: TypeError: multiple bases have instance lay-out conflict) Nilesh Patra
2021/12/09 Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Nilesh Patra
2021/12/09 please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Steffen Möller
2021/12/09 Re: Bug#984063: [Debian-med-packaging] Bug#984063: Please lets coordinate itk4/itk5 issues (Was: Bug#984063) Adrian Bunk
2021/12/09 jblas update to 1.2.5? tony mancill
2021/12/09 Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError) Andreas Tille
2021/12/09 Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError) Nilesh Patra
2021/12/09 [Advent bug squashing] #1000814 python-cooler: 10 test failures with pandas 1.3: TypeError: 'IOHandles' object is not subscriptable Andreas Tille
2021/12/09 Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError) Andreas Tille
2021/12/09 Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError) Nilesh Patra
2021/12/09 [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError) Andreas Tille
2021/12/09 [Advent bug squashing] (Honor belongs to Nilesh Patra): Bug#965361: marked as done (python-cooler: please make the build reproducible) Andreas Tille
2021/12/08 Re: Packaging TechneNotes [Was: Re: Project proposal for the Debian Med group] Andrius Merkys
2021/12/08 Re: Packaging TechneNotes [Was: Re: Project proposal for the Debian Med group] Andreas Tille
2021/12/08 Packaging TechneNotes [Was: Re: Project proposal for the Debian Med group] Andrius Merkys
2021/12/08 [Advent bug squashing] Bug#1001305: marked as done (orthanc ftbfs with glibc 2.34) Andreas Tille
2021/12/08 [Advent bug squashing] Bug#1001284: marked as done (python-pysam: libhts-dev build dependency must be bumped to >= 1.14) Andreas Tille
2021/12/08 [Advent bug squashing] Bug#1001282: marked as done (samtools: libhts-dev build dependency must be bumped to >= 1.14) Andreas Tille
2021/12/08 Re: Any help to get pydicom build welcome Mathieu Malaterre
2021/12/08 Re: Any help to get pydicom build welcome Andreas Tille
2021/12/07 Any help to get pydicom build welcome Andreas Tille
2021/12/07 New versions of htslib, samtools, bcftools and python-pysam in experimental - at least one package jellyfish does not work with these Andreas Tille
2021/12/07 Re: [Advent bug squashing] r-bioc-dropletutils: autopkgtest failures ... fixed with new version thus closing the bug Andreas Tille
2021/12/07 Re: [Advent bug squashing] r-bioc-dropletutils: autopkgtest failures ... fixed with new version thus closing the bug Nilesh Patra
2021/12/07 [Advent bug squashing] bcftools: FTBFS: any-i386 - floating point idiosyncracies - solved in recent versions Andreas Tille
2021/12/07 [Advent bug squashing] r-bioc-dropletutils: autopkgtest failures ... fixed with new version thus closing the bug Andreas Tille
2021/12/06 [Advent bug squashing] Bug#909280: marked as done (elastix: New upstream available) Andreas Tille
2021/12/06 [Advent bug squashing] Bug#997325: marked as done (python-sqlsoup: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.9 returned exit code 13) Andreas Tille
2021/12/06 [Advent bug squashing] Bug#995781: marked as done (python-sqlsoup autopkgtest fails with SQLAlchemy 1.4.23+ds1-2)] Andreas Tille
2021/12/05 Re: [Debian-med-packaging] insighttoolkit5_5.2.1-1_amd64.changes ACCEPTED into unstable, unstable Nilesh Patra
2021/12/05 [Advent bug squashing] Bug#981753: marked as done (COPY cannot find "/usr/share/nodejs/axios/dist/axios.min.js") Andreas Tille
2021/12/05 Re: Project proposal for the Debian Med group Andrius Merkys
2021/12/04 [Advent bug squashing] Bug#995258: marked as done (python-pairix: please make the build reproducible) Nilesh Patra
2021/12/04 Re: src:prime-phylo: no autopkgtest available yet Nilesh Patra
2021/12/04 [Advent bug squashing] Bug#950914 python3-biomaj3: Depends on python-influxdb Nilesh Patra
2021/12/04 [Advent bug squashing] Bug#1000812: marked as done (pyrle: import fails on Python 3.10) Nilesh Patra
2021/12/04 [Advent bug squashing] Closing 7 year old bug of ancient version with no response from reporter Andreas Tille
2021/12/04 Re: [RFH] Bug#1000812: pyrle: import fails on Python 3.10 Nilesh Patra
2021/12/04 Re: [RFH] Bug#1000812: pyrle: import fails on Python 3.10 Stefano Rivera
2021/12/04 [RFH] Bug#1000812: pyrle: import fails on Python 3.10 Nilesh Patra
2021/12/04 [Advent bug squashing] Bug#999525: marked as done (bmtk: FTBFS with numpy 1.21 (in experimental): dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13)] Andreas Tille
2021/12/03 [Advent bug squashing] Bug is fixed due to upload of recent numpy Andreas Tille
2021/12/03 [Advent bug squashing] Bug#962675: marked as done (can cdbfasta be marked Multi-Arch: foreign?) Andreas Tille
2021/12/02 [Advent bug squashing] Bugs #989328 and #989961 : newest picard-tools in unstable Pierre Gruet
2021/12/02 Re: [Advent bug squashing] Bug#997884: marked as done (libgclib breaks cdbfasta autopkgtest: ABI breakage?) Andreas Tille
2021/12/02 [Advent bug squashing] Bug#963866: marked as done (libbio-cluster-perl: circular dependency hell) Andreas Tille
2021/12/01 [Advent bug squashing] ftpmaster has closed "#875184: [sofa-framework] Future Qt4 removal from Buster" for us Andreas Tille
2021/12/01 Debian Med video conference tomorrow, Thursday 2021-12-02 18:00 UTC Andreas Tille
2021/11/30 [Advent bug squashing] #1000856, #1000857 Please join our advent bug squashing party Andreas Tille
2021/11/23 Re: RM profphd? Pierre Gruet
2021/11/23 Re: RM profphd? Nilesh Patra
2021/11/23 Re: RM profphd? Andreas Tille
2021/11/23 RM profphd? Nilesh Patra
2021/11/23 [RFH] opensurgsim Bug#997265 Nilesh Patra
2021/11/22 Bug#1000434: RM: libbiod -- ROM; Does not build with gcc-11, unmaintained upstream, no reverse-depends any more Andreas Tille
2021/11/22 Re: Testing excuses for sight ? Nilesh Patra
2021/11/20 Re: ncbi-vdb plans (fixing i386, enabling arm64) Aaron M. Ucko
2021/11/19 Re: ncbi-vdb does not build on i386 thus migration is blocked Aaron M. Ucko
2021/11/19 ncbi-vdb does not build on i386 thus migration is blocked Andreas Tille
2021/11/18 Re: I injected so many packages to have good chances to receive and fix bug #1000000 ;-) [ow...@bugs.debian.org: Bug#1000000: marked as done (phast: depends on obsolete pcre3 library)] Andreas Tille
2021/11/18 Re: I injected so many packages to have good chances to receive and fix bug #1000000 ;-) [ow...@bugs.debian.org: Bug#1000000: marked as done (phast: depends on obsolete pcre3 library)] Nilesh Patra
2021/11/18 I injected so many packages to have good chances to receive and fix bug #1000000 ;-) [ow...@bugs.debian.org: Bug#1000000: marked as done (phast: depends on obsolete pcre3 library)] Andreas Tille
2021/11/18 Re: Request to (re)join debian-med Nilesh Patra
2021/11/18 Re: Request to (re)join debian-med Andreas Tille
2021/11/18 Request to (re)join debian-med Mathieu Malaterre
2021/11/17 Re: Heudiconv moved to Debian Med repository Yaroslav Halchenko
2021/11/17 Re: Heudiconv moved to Debian Med repository Nilesh Patra
2021/11/17 Re: Heudiconv moved to Debian Med repository Andreas Tille
2021/11/17 Re: Heudiconv moved to Debian Med repository Yaroslav Halchenko
2021/11/17 Re: Heudiconv moved to Debian Med repository Andreas Tille
2021/11/17 Re: Zim versus CherryTree Tony Travis
2021/11/17 Zim versus CherryTree Steven Robbins
2021/11/17 Re: Heudiconv moved to Debian Med repository Yaroslav Halchenko
2021/11/17 Heudiconv moved to Debian Med repository Andreas Tille
2021/11/17 Re: Project proposal for the Debian Med group Andrius Merkys
2021/11/17 Re: Project proposal for the Debian Med group Tony Travis
2021/11/17 Re: Project proposal for the Debian Med group Guido Rovera
2021/11/16 Re: Debian Med video conference tomorrow, Wednesday 2021-11-17 18:00 UTC Steffen Möller
2021/11/16 Debian Med video conference tomorrow, Wednesday 2021-11-17 18:00 UTC Nilesh Patra
2021/11/16 Bug#995294: marked as done (ITP: tipp -- taxonomic identification and abundance profiling tool) Debian Bug Tracking System
2021/11/16 Re: MRIcron Andreas Tille
2021/11/16 Re: Debian maintainer for MRIcron Andreas Tille
2021/11/15 MRIcron Rorden, Chris
2021/11/15 Re: Progress in merging neurodebian team? Andreas Tille
2021/11/15 Re: Moving htcondor to Debian Med and trying to upgrade Andreas Tille
2021/11/15 Re: Progress in merging neurodebian team? Ben Tris
2021/11/15 Re: Progress in merging neurodebian team? Ben Tris
2021/11/15 Moving htcondor to Debian Med and trying to upgrade Andreas Tille
2021/11/15 Re: Progress in merging neurodebian team? Andreas Tille
2021/11/15 itksnap (Was: Progress in merging neurodebian team?) Andreas Tille
2021/11/14 Re: Progress in merging neurodebian team? Andreas Tille
2021/11/14 Re: Progress in merging neurodebian team? Nilesh Patra
2021/11/14 Re: Progress in merging neurodebian team? Andreas Tille
2021/11/14 Re: Progress in merging neurodebian team? Andreas Tille
2021/11/13 Re: Progress in merging neurodebian team? Ben Tris
2021/11/13 Re: Accepted ncbi-vdb 2.11.2+dfsg-2 (source) into unstable Aaron M. Ucko
2021/11/13 Re: Progress in merging neurodebian team? Yaroslav Halchenko
2021/11/13 Re: Progress in merging neurodebian team? Nilesh Patra
2021/11/13 Re: Progress in merging neurodebian team? Nilesh Patra
2021/11/13 Re: Progress in merging neurodebian team? Andreas Tille
2021/11/13 Progress in merging neurodebian team? Nilesh Patra
2021/11/12 Re: Accepted ncbi-vdb 2.11.2+dfsg-2 (source) into unstable Andreas Tille
2021/11/12 Re: Moved dcmstack to Debian Med team - any idea how to fix test failure? Andreas Tille
2021/11/12 Re: Moved dcmstack to Debian Med team - any idea how to fix test failure? Nilesh Patra
2021/11/12 Re: Accepted ncbi-vdb 2.11.2+dfsg-2 (source) into unstable Aaron M. Ucko
2021/11/12 Moved dcmstack to Debian Med team - any idea how to fix test failure? Andreas Tille
2021/11/11 Is Omictools down? (Was: Bug#999489: perm: homepage change) Andreas Tille
2021/11/11 Re: debian med blend thermometer unrelated crux should probably be crux-toolkit Ben Tris
2021/11/11 Re: debian med blend thermometer unrelated crux should probably be crux-toolkit Andreas Tille
2021/11/11 Re: debian med blend thermometer unrelated crux should probably be crux-toolkit Ben Tris
2021/11/11 Re: debian med blend thermometer unrelated crux should probably be crux-toolkit Ben Tris
2021/11/10 Re: debian med blend thermometer unrelated crux should probably be crux-toolkit Andreas Tille
2021/11/10 Re: libjung-java needs some love Andreas Tille
2021/11/10 debian med blend thermometer unrelated crux should probably be crux-toolkit Ben Tris
2021/11/10 Re: libjung-java needs some love Pierre Gruet
2021/11/10 Re: Thanks a lot for enabling igv in main [Was: igv_2.6.3+dfsg2-1_amd64.changes ACCEPTED into unstable, unstable] Nilesh Patra