Re: [Freesurfer] Unable to run recon-all

External Email - Use Caution  The install location of freesurfer under /usr/local is on purpose read only (like the location of most Linux package installs) so you should not be trying to process and write subject data there.  We provide example subjects under /usr/local/freesur

[Freesurfer] Unable to run recon-all

External Email - Use Caution Dear Freesurfer personnel, I downloaded and installed the latest version successfully following the instructions on windows WSL. However, I could not run recon-all. I then installed an older version, but I still could not run the recon-all. Could you

Re: [Freesurfer] Unable to Run Recon-all on T1 Image

: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Annie Cooper Sent: Wednesday, March 15, 2023 2:19 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Unable to Run Recon-all on T1 Image External Email - Use Caution Hi there, I am trying to run recon-all using the Agave

[Freesurfer] Unable to Run Recon-all on T1 Image

External Email - Use Caution Hi there, I am trying to run recon-all using the Agave Supercomputer at ASU. When I try to run recon-all, these error messages pop up prohibiting me from running recon-all on my T1 image. Here is the error message I received: [asurite@agave2:~/Desktop

Re: [Freesurfer] Unable to run recon-all

External Email - Use Caution I noticed the error and I fixed. Thank you, Rosie On Fri, Jun 25, 2021 at 8:45 PM Rosalia Dacosta Aguayo wrote: > Dear Freesurfer team, > > Sorry for posting this question but I have been trying different things > and nothing seems to work. > > r

[Freesurfer] Unable to run recon-all

External Email - Use Caution Dear Freesurfer team, Sorry for posting this question but I have been trying different things and nothing seems to work. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s sub-001_ses-BSL -i sub-001_ses-BSL_T1w.nii -T2 sub-001_ses-BSL_T2w.nii

Re: [Freesurfer] Unable to run recon all

External Email - Use Caution Hi Dough, I was just wondering if you got a chance to look at the files I uploaded on Martinos Center File Drop . I would really appreciate any help/updates. Best, Sahil On Mon, Jan 6, 2020 at 11:50 AM Sah

Re: [Freesurfer] Unable to run recon all

External Email - Use Caution Hi Dough, I just uploaded one of the files on Martinos Center File Drop . I hope that works ! (Somehow, uploading through ftp was taking too long). Thanks. On Mon, Jan 6, 2020 at 11:19 AM Greve, Douglas N.

Re: [Freesurfer] Unable to run recon all

It is not clear why it failed for these subjects (always happens at the same place). Can you upload one of them for me to take a look at? here are the instructions From the linux command line, Create the file you want to upload, eg, cd $SUBJECTS_DIR tar cvfz subject.tar.gz ./subject Now log  in

Re: [Freesurfer] Unable to run recon all

Can you send the recon-all.log file? You sent the .error file On 12/20/2019 10:13 AM, Sahil Bajaj wrote: External Email - Use Caution Hello FS experts, I am trying to run recon all on about 100 subjects. But one out of 100 subjects finishes recon all with error, and doesn't complete th

[Freesurfer] Unable to run recon all

External Email - Use Caution Hello FS experts, I am trying to run recon all on about 100 subjects. But one out of 100 subjects finishes recon all with error, and doesn't complete the process. Here I am attaching recon all log for your reference. Also, before installing freesurfer