External Email - Use Caution Dear Freesurfer team,
Sorry for posting this question but I have been trying different things and nothing seems to work. rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s sub-001_ses-BSL -i sub-001_ses-BSL_T1w.nii -T2 sub-001_ses-BSL_T2w.nii -T2pial -all *ERROR: cannot find sub-001_ses-BSL_T1w.nii* Linux rosalia-Lenovo-Y520-15IKBN 4.10.0-40-generic #44~16.04.1-Ubuntu SMP Thu Nov 9 15:37:44 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-001_ses-BSL exited with ERRORS at Fri 25 Jun 20:41:02 CEST 2021 For more details, see the log file To report a problem, see http://secure-web.cisco.com/1Jp49SO4XsOvSB6mE6NlUUK8Lo6N1S98h7rexTU7o7iNmF3HXYk9eRqaAJyx7DYnuNCe0kFVHgKTjXKz7ilUTP7WNtOEH4JJ-gSqCBAM75KBRcU0T1KvNsPYcwHED-2YQprjyXHv1ESqbJjkBZJG758oE86AlmdJXMDmtVJRCcbI6LqIbNCEgRQB8M8cwzaHApKNM-GdS4bL63xk3yjY44WbgMoXi9GO7R9Hm5xD3aik9lrQxpXSOhprhQHxIMAnNQ--uP_tzYr3op08Crtd16w/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd ARTICO rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ ls sub-001_ses-BSL sub-003_ses-BSL sub-005_ses-BSL sub-002_ses-BSL sub-004_ses-BSL sub-006_ses-BSL rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO $ cd sub-001_ses-BSL/ rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO/sub-001_ses-BSL $ ls sub-001_ses-BSL_T1w.nii sub-001_ses-BSL_T2w.nii rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/ARTICO/sub-001_ses-BSL $ If I trying to run recon-all inside the subject folder it tells me that this subject has already been run and if that it is a new subject, I should change the name of the folder and the files. I do it, and it keeps giving me the same error. I am out of ideas...
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