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Dear Freesurfer personnel,
I downloaded and installed the latest version successfully following the
instructions on windows WSL.
However, I could not run recon-all.
I then installed an older version, but I still could not run the recon-all.
Could you please kindly advise me on how to resolve this issue?
Thank you.
Regards,
Ying Hwey
________________________________
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recon-all -s VATPSP-001 -i
/mnt/c/Users/naiy/Documents/naiy/VATPSP/NIFTI/VATPSP-001/VATPSP-001_M
RI/trans_VATPSP-001_T1.nii -all
mkdir: cannot create directory
'/usr/local/freesurfer/7.4.0/subjects/VATPSP-001': Permission denied
fs-check-version --s VATPSP-001 --o /tmp/tmp.yht0uH
ERROR: cannot find VATPSP-001
recon-all: version check failed
fs-check-version --s VATPSP-001 --o /tmp/tmp.yht0uH
###:~$ cd HOME
-bash: cd: HOME: No such file or directory
###:~$ cd $HOME
###:~$ ls
Documents freesurfer_ubuntu20-7.4.0_amd64.deb
freesurfer_ubuntu22-7.4.1_amd64.deb fsl license.txt matlab
###:~$ cd /user/local/
-bash: cd: /user/local/: No such file or directory
###:~$ cd /usr/local/freesurfer/
###:/usr/local/freesurfer$ cp \$HOME/license.txt /usr/local/freesurfer/
cp: cannot stat '$HOME/license.txt': No such file or directory
###:/usr/local/freesurfer$ cp $HOME/license.txt /usr/local/freesurfer/
cp: cannot create regular file '/usr/local/freesurfer/license.txt': Permission
denied
###:/usr/local/freesurfer$ $FS_LICENSE
/home/naiy/license.txt: line 1: n...@wustl.edu: command not found
/home/naiy/license.txt: line 2: 68956: command not found
/home/naiy/license.txt: line 3: *Cf4wMjQe2ZhQ: command not found
/home/naiy/license.txt: line 4: FSYJ2rnfO8uHU: command not found
###:/usr/local/freesurfer$ cd /usr/local/freesurfer/
###:/usr/local/freesurfer$ ls
7.4.0 license.txt
###:/usr/local/freesurfer$ $FS_LICENSE
/home/naiy/license.txt: line 1: n...@wustl.edu: command not found
/home/naiy/license.txt: line 2: 68956: command not found
/home/naiy/license.txt: line 3: *Cf4wMjQe2ZhQ: command not found
/home/naiy/license.txt: line 4: FSYJ2rnfO8uHU: command not found
###:/usr/local/freesurfer$
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