It is not clear why it failed for these subjects (always happens at the same place). Can you upload one of them for me to take a look at? here are the instructions
From the linux command line, Create the file you want to upload, eg, cd $SUBJECTS_DIR tar cvfz subject.tar.gz ./subject Now log into our anonymous FTP site: ftp surfer.nmr.mgh.harvard.edu It will ask you for a user name: use "anonymous" (no quotes) It will ask you for a password: use "anonymous" (no quotes) cd transfer/incoming binary put subject.tar.gz Send an email that the file has been and the name of the file. On 1/6/20 11:49 AM, Sahil Bajaj wrote: > > External Email - Use Caution > > Hi Dough, > > I finished recon -all on about 515 subjects and I get error in 11 out > of 515 subjects. Here I am attaching recon-all.log files of all those > 11 subjects. I would really appreciate your help in fixing these errors. > > Thanks, > Sahil > > On Thu, Jan 2, 2020 at 10:03 AM Greve, Douglas N.,Ph.D. > <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote: > > Can you send the recon-all.log file? You sent the .error file > > On 12/20/2019 10:13 AM, Sahil Bajaj wrote: >> >> External Email - Use Caution >> >> Hello FS experts, >> >> I am trying to run recon all on about 100 subjects. But one out >> of 100 subjects finishes recon all with error, and doesn't >> complete the process. Here I am attaching recon all log for your >> reference. Also, before installing freesurfer on MAC Catalina, I >> ran sudo spctl - -master -disable >> >> I would really appreciate any help in resolving this. >> >> Thanks, >> Sahil >> 1) FreeSurfer version: >> >> freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c >> >> 2) Platform: MACOS Catalina >> 3) recon-all.log: see attached >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
