External Email - Use Caution Hi Dough,
I just uploaded one of the files on Martinos Center File Drop <https://gate.nmr.mgh.harvard.edu/filedrop2/>. I hope that works ! (Somehow, uploading through ftp was taking too long). Thanks. On Mon, Jan 6, 2020 at 11:19 AM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > It is not clear why it failed for these subjects (always happens at the > same place). Can you upload one of them for me to take a look at? here > are the instructions > > From the linux command line, > Create the file you want to upload, eg, > cd $SUBJECTS_DIR > tar cvfz subject.tar.gz ./subject > Now log into our anonymous FTP site: > ftp surfer.nmr.mgh.harvard.edu > It will ask you for a user name: use "anonymous" (no quotes) > It will ask you for a password: use "anonymous" (no quotes) > cd transfer/incoming > binary > put subject.tar.gz > Send an email that the file has been and the name of the file. > > > > On 1/6/20 11:49 AM, Sahil Bajaj wrote: > > > > External Email - Use Caution > > > > Hi Dough, > > > > I finished recon -all on about 515 subjects and I get error in 11 out > > of 515 subjects. Here I am attaching recon-all.log files of all those > > 11 subjects. I would really appreciate your help in fixing these errors. > > > > Thanks, > > Sahil > > > > On Thu, Jan 2, 2020 at 10:03 AM Greve, Douglas N.,Ph.D. > > <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote: > > > > Can you send the recon-all.log file? You sent the .error file > > > > On 12/20/2019 10:13 AM, Sahil Bajaj wrote: > >> > >> External Email - Use Caution > >> > >> Hello FS experts, > >> > >> I am trying to run recon all on about 100 subjects. But one out > >> of 100 subjects finishes recon all with error, and doesn't > >> complete the process. Here I am attaching recon all log for your > >> reference. Also, before installing freesurfer on MAC Catalina, I > >> ran sudo spctl - -master -disable > >> > >> I would really appreciate any help in resolving this. > >> > >> Thanks, > >> Sahil > >> 1) FreeSurfer version: > >> > >> freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c > >> > >> 2) Platform: MACOS Catalina > >> 3) recon-all.log: see attached > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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