External Email - Use Caution Hi Dough,
I was just wondering if you got a chance to look at the files I uploaded on Martinos Center File Drop <https://gate.nmr.mgh.harvard.edu/filedrop2/>. I would really appreciate any help/updates. Best, Sahil On Mon, Jan 6, 2020 at 11:50 AM Sahil Bajaj <sahil.br...@gmail.com> wrote: > Hi Dough, > > I just uploaded one of the files on Martinos Center File Drop > <https://gate.nmr.mgh.harvard.edu/filedrop2/>. I hope that works ! > (Somehow, uploading through ftp was taking too long). > > Thanks. > > On Mon, Jan 6, 2020 at 11:19 AM Greve, Douglas N.,Ph.D. < > dgr...@mgh.harvard.edu> wrote: > >> It is not clear why it failed for these subjects (always happens at the >> same place). Can you upload one of them for me to take a look at? here >> are the instructions >> >> From the linux command line, >> Create the file you want to upload, eg, >> cd $SUBJECTS_DIR >> tar cvfz subject.tar.gz ./subject >> Now log into our anonymous FTP site: >> ftp surfer.nmr.mgh.harvard.edu >> It will ask you for a user name: use "anonymous" (no quotes) >> It will ask you for a password: use "anonymous" (no quotes) >> cd transfer/incoming >> binary >> put subject.tar.gz >> Send an email that the file has been and the name of the file. >> >> >> >> On 1/6/20 11:49 AM, Sahil Bajaj wrote: >> > >> > External Email - Use Caution >> > >> > Hi Dough, >> > >> > I finished recon -all on about 515 subjects and I get error in 11 out >> > of 515 subjects. Here I am attaching recon-all.log files of all those >> > 11 subjects. I would really appreciate your help in fixing these errors. >> > >> > Thanks, >> > Sahil >> > >> > On Thu, Jan 2, 2020 at 10:03 AM Greve, Douglas N.,Ph.D. >> > <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote: >> > >> > Can you send the recon-all.log file? You sent the .error file >> > >> > On 12/20/2019 10:13 AM, Sahil Bajaj wrote: >> >> >> >> External Email - Use Caution >> >> >> >> Hello FS experts, >> >> >> >> I am trying to run recon all on about 100 subjects. But one out >> >> of 100 subjects finishes recon all with error, and doesn't >> >> complete the process. Here I am attaching recon all log for your >> >> reference. Also, before installing freesurfer on MAC Catalina, I >> >> ran sudo spctl - -master -disable >> >> >> >> I would really appreciate any help in resolving this. >> >> >> >> Thanks, >> >> Sahil >> >> 1) FreeSurfer version: >> >> >> >> freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c >> >> >> >> 2) Platform: MACOS Catalina >> >> 3) recon-all.log: see attached >> >> >> >> _______________________________________________ >> >> Freesurfer mailing list >> >> Freesurfer@nmr.mgh.harvard.edu <mailto: >> Freesurfer@nmr.mgh.harvard.edu> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu <mailto: >> Freesurfer@nmr.mgh.harvard.edu> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >
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