Hi,
Thank you so much for assistant me in the process. I could do that. It
worked. Thanks
Faezeh Vedaei
On Wed, Mar 2, 2016 at 6:15 PM, Faeze Vedaei wrote:
> Hi
>
> Thank you so much for your help. I just got your meaning. I created new
> LUT file by just changing randomly the RBG values for e
Hi
Thank you so much for your help. I just got your meaning. I created new LUT
file by just changing randomly the RBG values for each 13 specific regions
and opened the annot file in tksurfer. And the strange issue is that just
for paracentral I used your values I had paracentral in tksurfer GUI n
just change the values and re-run with different numbers and see what happens
On Wed, Mar 2, 2016 at 2:59 PM, Faeze Vedaei wrote:
> Hi,
>
> Thank you for your response. sorry, I could not understand what you mean.
> How you found 23 230 60 values for paracentral region? I mean. Are these
> from F
Hi,
Thank you for your response. sorry, I could not understand what you mean.
How you found 23 230 60 values for paracentral region? I mean. Are these
from Freesurfer LUT?
Regards,
Faezeh Vedaei
On Tue, Mar 1, 2016 at 9:33 PM, Faeze Vedaei wrote:
> Thank you for your response. It is better to
Those numbers only refer to the color the too will appear: hence the name color
lookup table
hth
d
Sent from my Phone
> On Mar 1, 2016, at 21:33, Faeze Vedaei wrote:
>
> Thank you for your response. It is better to explain my question that the
> coordinates for paracentral in .ctab file is '6
Thank you for your response. It is better to explain my question that the
coordinates for paracentral in .ctab file is '63 100 60', that you changed
these to '23 230 60' in your new version. My question is that how you
applied such this change on the RBG values for this region?
Regards,
Faezeh
On
It is just a text file (you can open it with vi or gedit whatever),
just add new lines for new labels and make the colors the color you
want them to be.\
hth
d
On Tue, Mar 1, 2016 at 5:55 PM, Faeze Vedaei wrote:
> Thank you so much for you response. I should say that I know about what you
> are
Thank you so much for you response. I should say that I know about what you
are saying. My issue is that I have these 4 columns in my LUT file. Why and
how can I change the numbers (RGB values) to create new LUT?
Bests,
Faezeh
On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei wrote:
> Hi,
>
> Thank
The 4 number columns represent:
Red Green Blue and Alpha
The numbers range from 0-255. They can be combined to create any
color. Play around, and you will see what it does.
hth,
d
On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei wrote:
> Hi,
>
> Thank you so much for you descriptions. I checked out
Hi,
Thank you so much for you descriptions. I checked out the link you just
sent me. Because I do not have many experiences working with Freesurfer, I
really could not understand about how I can do such this revising in LUT
file. Can you explain more about this? I truly appreciate your time and
he
Hi Faezeh,
Check this page out for details. The values are just numbers in the
columns of the file:
https://en.wikipedia.org/wiki/RGB_color_model
hth
d
On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei wrote:
> Hi,
>
> I really appreciate you for help me in this process. May you clarify me from
> w
Hi,
I really appreciate you for help me in this process. May you clarify me
from which pattern you changed the RGB values for that region? How I can
change the coordinates for the others?
Regards,
Faezeh Vedaei
On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei wrote:
> Hi,
>
> I should let you kno
yes, just follow the pattern of the file. You will probably want to
use different RGB values to get different colored labels.
hth
d
On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei wrote:
> Hi,
>
> I should let you know that, it works! It shows paracentral name in tksurfer.
> So, how I have to revis
Hi,
I should let you know that, it works! It shows paracentral name in
tksurfer. So, how I have to revise my .ctab file to get the right result?
Regards,
Faezeh Vedaei
On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei wrote:
> Hi,
>
> Thank you for your response. I just used the command you suggest
Hi Faezeh,
Please run the exact commands including the file I attached, not the
aparc.annot.a2009s.ctab, and check the result using the freeview
command I provided. Then let me know what label freeview shows.
hth
d
On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei wrote:
> Hi,
>
> Thank you for your
Hi,
Thank you for your response. I just used the command you suggested to use
by just a change in calling .ctab LUT file. I used the path:
002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just
calling aparc.annot.a2009s.ctab. It is strange that I created annot file
for lh.G_an
Hi Faezeh,
It is strange that the LUT file you sent doesn't seem to be named
anything similar to the file you called. You are calling
new/002_S_0413/labels/aparc.annot.a2009s.ctab
There also seem to be some basic issues with the command --s should
just have the name of the subject not a separate
Hi,
Here is the text format of those files.
Regards,
Faezeh Vedaei
On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei wrote:
> Hi
>
> Thank you so much for your response. I attached here three files including
> the command lines, LUT file , and the list of names I want to get and what
> the result
Hi Faezeh,
Can you send these in the text of the email. It is very hard to deal
with these files? The LUT file shouldn't be an excel file it should be
a plain text document (please attach).
Thanks,
D
On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei wrote:
> Hi
>
> Thank you so much for your respon
Hi
Thank you so much for your response. I attached here three files including
the command lines, LUT file , and the list of names I want to get and what
the result is actually. I'd appreciate if you look at them and let me know
what is wrong with that.
Regards,
Faezeh Vedaei
On Mon, Feb 29, 2016
Hi Faezeh,
Please provide more details (those i described in the earlier email).
Thanks
d
On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei wrote:
> Hi,
>
> I checked again to arrange the labels in the order of LUT file, but the
> result has not changed. Can you help me more how I can fix this prob
Hi,
I checked again to arrange the labels in the order of LUT file, but the
result has not changed. Can you help me more how I can fix this problem?
Thank you so much for your time and help.
Regards,
Faezeh Vedaei
On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei wrote:
> Hi,
>
> Thank you for you
Hi Faeze,
It is difficult to help without more details, but in my experience,
(exact command, the color lut file in text in the email and what the
error in the naming was, which label went to which entry in the color
lut.)
You need to put the labels in the order of your custom color lut file.
ht
Hi,
Thank you for your response. Yes, you are right. The names come from the
color LUT file. But, the issue is that I chose the label files from that
LUT file too. It meas the source that I chose the label files from and the
source of the region's names in tksurfer are the same. The problem is jus
Hi Faeze,
I believe the name comes from the Color LUT file. Try changing the
name in there.
hth
d
On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei wrote:
> Hi Freesurfer experts,
>
> I have created an annotation file by several label files using
> mris_label2annot command in Freesurfer. The probl
Hi Freesurfer experts,
I have created an annotation file by several label files using
mris_label2annot command in Freesurfer. The problem is that when I open
this annot file in tksurfer and click on colored regions which corresponded
to specific labels I had chosen them, I do not have their name o
26 matches
Mail list logo
