Hi Faezeh, Can you send these in the text of the email. It is very hard to deal with these files? The LUT file shouldn't be an excel file it should be a plain text document (please attach).
Thanks, D On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi > > Thank you so much for your response. I attached here three files including > the command lines, LUT file , and the list of names I want to get and what > the result is actually. I'd appreciate if you look at them and let me know > what is wrong with that. > > Regards, > Faezeh Vedaei > > On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: >> >> Hi, >> >> I checked again to arrange the labels in the order of LUT file, but the >> result has not changed. Can you help me more how I can fix this problem? >> Thank you so much for your time and help. >> >> Regards, >> Faezeh Vedaei >> >> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >>> >>> Hi, >>> >>> Thank you for your response. Yes, you are right. The names come from the >>> color LUT file. But, the issue is that I chose the label files from that LUT >>> file too. It meas the source that I chose the label files from and the >>> source of the region's names in tksurfer are the same. The problem is just I >>> do not have the label's names I merged to create annot file, in the tksurfer >>> GUI. It shows another names of that list! So, what do you think about? What >>> is the problem? >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>>> >>>> Hi Freesurfer experts, >>>> >>>> I have created an annotation file by several label files using >>>> mris_label2annot command in Freesurfer. The problem is that when I open >>>> this >>>> annot file in tksurfer and click on colored regions which corresponded to >>>> specific labels I had chosen them, I do not have their name on the vertex >>>> information part at the bottom of tksurfer GUI. It shows very different >>>> names for these regions. May you explains me what is the problem I could >>>> not >>>> see the exact region's name as I have them for label files? >>>> >>>> Thanks, >>>> Faezeh Vedaei >>> >>> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
