Hi Faeze, It is difficult to help without more details, but in my experience, (exact command, the color lut file in text in the email and what the error in the naming was, which label went to which entry in the color lut.)
You need to put the labels in the order of your custom color lut file. hth d On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi, > > Thank you for your response. Yes, you are right. The names come from the > color LUT file. But, the issue is that I chose the label files from that LUT > file too. It meas the source that I chose the label files from and the > source of the region's names in tksurfer are the same. The problem is just I > do not have the label's names I merged to create annot file, in the tksurfer > GUI. It shows another names of that list! So, what do you think about? What > is the problem? > > Regards, > Faezeh Vedaei > > On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei <faezeved...@gmail.com> > wrote: >> >> Hi Freesurfer experts, >> >> I have created an annotation file by several label files using >> mris_label2annot command in Freesurfer. The problem is that when I open this >> annot file in tksurfer and click on colored regions which corresponded to >> specific labels I had chosen them, I do not have their name on the vertex >> information part at the bottom of tksurfer GUI. It shows very different >> names for these regions. May you explains me what is the problem I could not >> see the exact region's name as I have them for label files? >> >> Thanks, >> Faezeh Vedaei > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
