just change the values and re-run with different numbers and see what happens
On Wed, Mar 2, 2016 at 2:59 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Hi, > > Thank you for your response. sorry, I could not understand what you mean. > How you found 23 230 60 values for paracentral region? I mean. Are these > from Freesurfer LUT? > > Regards, > Faezeh Vedaei > > On Tue, Mar 1, 2016 at 9:33 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: >> >> Thank you for your response. It is better to explain my question that the >> coordinates for paracentral in .ctab file is '63 100 60', that you changed >> these to '23 230 60' in your new version. My question is that how you >> applied such this change on the RBG values for this region? >> >> Regards, >> Faezeh >> >> On Tue, Mar 1, 2016 at 5:55 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >>> >>> Thank you so much for you response. I should say that I know about what >>> you are saying. My issue is that I have these 4 columns in my LUT file. Why >>> and how can I change the numbers (RGB values) to create new LUT? >>> >>> Bests, >>> Faezeh >>> >>> On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>>> >>>> Hi, >>>> >>>> Thank you so much for you descriptions. I checked out the link you just >>>> sent me. Because I do not have many experiences working with Freesurfer, I >>>> really could not understand about how I can do such this revising in LUT >>>> file. Can you explain more about this? I truly appreciate your time and >>>> help. >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>>> >>>>> Hi, >>>>> >>>>> I really appreciate you for help me in this process. May you clarify me >>>>> from which pattern you changed the RGB values for that region? How I can >>>>> change the coordinates for the others? >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> >>>>> On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>>> >>>>>> Hi, >>>>>> >>>>>> I should let you know that, it works! It shows paracentral name in >>>>>> tksurfer. So, how I have to revise my .ctab file to get the right result? >>>>>> >>>>>> Regards, >>>>>> Faezeh Vedaei >>>>>> >>>>>> On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>>> wrote: >>>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> Thank you for your response. I just used the command you suggested to >>>>>>> use by just a change in calling .ctab LUT file. I used the path: >>>>>>> 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by >>>>>>> just >>>>>>> calling aparc.annot.a2009s.ctab. It is strange that I created annot >>>>>>> file for >>>>>>> lh.G_and_S_paracentral.label, but it shows its name in tksurfer: >>>>>>> G_and_S_frontomarg! I excluded the part --nhits too. So, what is your >>>>>>> opinion? >>>>>>> >>>>>>> Regards, >>>>>>> Faezeh Vedaei >>>>>>> >>>>>>> On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> >>>>>>> wrote: >>>>>>>> >>>>>>>> Hi, >>>>>>>> >>>>>>>> >>>>>>>> Here is the text format of those files. >>>>>>>> >>>>>>>> Regards, >>>>>>>> Faezeh Vedaei >>>>>>>> >>>>>>>> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei >>>>>>>> <faezeved...@gmail.com> wrote: >>>>>>>>> >>>>>>>>> Hi >>>>>>>>> >>>>>>>>> Thank you so much for your response. I attached here three files >>>>>>>>> including the command lines, LUT file , and the list of names I want >>>>>>>>> to get >>>>>>>>> and what the result is actually. I'd appreciate if you look at them >>>>>>>>> and let >>>>>>>>> me know what is wrong with that. >>>>>>>>> >>>>>>>>> Regards, >>>>>>>>> Faezeh Vedaei >>>>>>>>> >>>>>>>>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei >>>>>>>>> <faezeved...@gmail.com> wrote: >>>>>>>>>> >>>>>>>>>> Hi, >>>>>>>>>> >>>>>>>>>> I checked again to arrange the labels in the order of LUT file, >>>>>>>>>> but the result has not changed. Can you help me more how I can fix >>>>>>>>>> this >>>>>>>>>> problem? Thank you so much for your time and help. >>>>>>>>>> >>>>>>>>>> Regards, >>>>>>>>>> Faezeh Vedaei >>>>>>>>>> >>>>>>>>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei >>>>>>>>>> <faezeved...@gmail.com> wrote: >>>>>>>>>>> >>>>>>>>>>> Hi, >>>>>>>>>>> >>>>>>>>>>> Thank you for your response. Yes, you are right. The names come >>>>>>>>>>> from the color LUT file. But, the issue is that I chose the label >>>>>>>>>>> files from >>>>>>>>>>> that LUT file too. It meas the source that I chose the label files >>>>>>>>>>> from and >>>>>>>>>>> the source of the region's names in tksurfer are the same. The >>>>>>>>>>> problem is >>>>>>>>>>> just I do not have the label's names I merged to create annot file, >>>>>>>>>>> in the >>>>>>>>>>> tksurfer GUI. It shows another names of that list! So, what do you >>>>>>>>>>> think >>>>>>>>>>> about? What is the problem? >>>>>>>>>>> >>>>>>>>>>> Regards, >>>>>>>>>>> Faezeh Vedaei >>>>>>>>>>> >>>>>>>>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei >>>>>>>>>>> <faezeved...@gmail.com> wrote: >>>>>>>>>>>> >>>>>>>>>>>> Hi Freesurfer experts, >>>>>>>>>>>> >>>>>>>>>>>> I have created an annotation file by several label files using >>>>>>>>>>>> mris_label2annot command in Freesurfer. The problem is that when I >>>>>>>>>>>> open this >>>>>>>>>>>> annot file in tksurfer and click on colored regions which >>>>>>>>>>>> corresponded to >>>>>>>>>>>> specific labels I had chosen them, I do not have their name on the >>>>>>>>>>>> vertex >>>>>>>>>>>> information part at the bottom of tksurfer GUI. It shows very >>>>>>>>>>>> different >>>>>>>>>>>> names for these regions. May you explains me what is the problem I >>>>>>>>>>>> could not >>>>>>>>>>>> see the exact region's name as I have them for label files? >>>>>>>>>>>> >>>>>>>>>>>> Thanks, >>>>>>>>>>>> Faezeh Vedaei >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. 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