Hi, Thank you for your response. sorry, I could not understand what you mean. How you found 23 230 60 values for paracentral region? I mean. Are these from Freesurfer LUT?
Regards, Faezeh Vedaei On Tue, Mar 1, 2016 at 9:33 PM, Faeze Vedaei <faezeved...@gmail.com> wrote: > Thank you for your response. It is better to explain my question that the > coordinates for paracentral in .ctab file is '63 100 60', that you changed > these to '23 230 60' in your new version. My question is that how you > applied such this change on the RBG values for this region? > > Regards, > Faezeh > > On Tue, Mar 1, 2016 at 5:55 PM, Faeze Vedaei <faezeved...@gmail.com> > wrote: > >> Thank you so much for you response. I should say that I know about what >> you are saying. My issue is that I have these 4 columns in my LUT file. Why >> and how can I change the numbers (RGB values) to create new LUT? >> >> Bests, >> Faezeh >> >> On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei <faezeved...@gmail.com> >> wrote: >> >>> Hi, >>> >>> Thank you so much for you descriptions. I checked out the link you just >>> sent me. Because I do not have many experiences working with Freesurfer, I >>> really could not understand about how I can do such this revising in LUT >>> file. Can you explain more about this? I truly appreciate your time and >>> help. >>> >>> Regards, >>> Faezeh Vedaei >>> >>> On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei <faezeved...@gmail.com> >>> wrote: >>> >>>> Hi, >>>> >>>> I really appreciate you for help me in this process. May you clarify me >>>> from which pattern you changed the RGB values for that region? How I can >>>> change the coordinates for the others? >>>> >>>> Regards, >>>> Faezeh Vedaei >>>> >>>> >>>> On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei <faezeved...@gmail.com> >>>> wrote: >>>> >>>>> Hi, >>>>> >>>>> I should let you know that, it works! It shows paracentral name in >>>>> tksurfer. So, how I have to revise my .ctab file to get the right result? >>>>> >>>>> Regards, >>>>> Faezeh Vedaei >>>>> >>>>> On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei <faezeved...@gmail.com> >>>>> wrote: >>>>> >>>>>> Hi, >>>>>> >>>>>> Thank you for your response. I just used the command you suggested to >>>>>> use by just a change in calling .ctab LUT file. I used the path: >>>>>> 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by >>>>>> just >>>>>> calling aparc.annot.a2009s.ctab. It is strange that I created annot file >>>>>> for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: >>>>>> G_and_S_frontomarg! I excluded the part --nhits too. So, what is your >>>>>> opinion? >>>>>> >>>>>> Regards, >>>>>> Faezeh Vedaei >>>>>> >>>>>> On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei <faezeved...@gmail.com> >>>>>> wrote: >>>>>> >>>>>>> Hi, >>>>>>> >>>>>>> >>>>>>> Here is the text format of those files. >>>>>>> >>>>>>> Regards, >>>>>>> Faezeh Vedaei >>>>>>> >>>>>>> On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei <faezeved...@gmail.com >>>>>>> > wrote: >>>>>>> >>>>>>>> Hi >>>>>>>> >>>>>>>> Thank you so much for your response. I attached here three files >>>>>>>> including the command lines, LUT file , and the list of names I want >>>>>>>> to get >>>>>>>> and what the result is actually. I'd appreciate if you look at them >>>>>>>> and let >>>>>>>> me know what is wrong with that. >>>>>>>> >>>>>>>> Regards, >>>>>>>> Faezeh Vedaei >>>>>>>> >>>>>>>> On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei < >>>>>>>> faezeved...@gmail.com> wrote: >>>>>>>> >>>>>>>>> Hi, >>>>>>>>> >>>>>>>>> I checked again to arrange the labels in the order of LUT file, >>>>>>>>> but the result has not changed. Can you help me more how I can fix >>>>>>>>> this >>>>>>>>> problem? Thank you so much for your time and help. >>>>>>>>> >>>>>>>>> Regards, >>>>>>>>> Faezeh Vedaei >>>>>>>>> >>>>>>>>> On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei < >>>>>>>>> faezeved...@gmail.com> wrote: >>>>>>>>> >>>>>>>>>> Hi, >>>>>>>>>> >>>>>>>>>> Thank you for your response. Yes, you are right. The names come >>>>>>>>>> from the color LUT file. But, the issue is that I chose the label >>>>>>>>>> files >>>>>>>>>> from that LUT file too. It meas the source that I chose the label >>>>>>>>>> files >>>>>>>>>> from and the source of the region's names in tksurfer are the same. >>>>>>>>>> The >>>>>>>>>> problem is just I do not have the label's names I merged to create >>>>>>>>>> annot >>>>>>>>>> file, in the tksurfer GUI. It shows another names of that list! So, >>>>>>>>>> what do >>>>>>>>>> you think about? What is the problem? >>>>>>>>>> >>>>>>>>>> Regards, >>>>>>>>>> Faezeh Vedaei >>>>>>>>>> >>>>>>>>>> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei < >>>>>>>>>> faezeved...@gmail.com> wrote: >>>>>>>>>> >>>>>>>>>>> Hi Freesurfer experts, >>>>>>>>>>> >>>>>>>>>>> I have created an annotation file by several label files using >>>>>>>>>>> mris_label2annot command in Freesurfer. The problem is that when I >>>>>>>>>>> open >>>>>>>>>>> this annot file in tksurfer and click on colored regions which >>>>>>>>>>> corresponded >>>>>>>>>>> to specific labels I had chosen them, I do not have their name on >>>>>>>>>>> the >>>>>>>>>>> vertex information part at the bottom of tksurfer GUI. It shows very >>>>>>>>>>> different names for these regions. May you explains me what is the >>>>>>>>>>> problem >>>>>>>>>>> I could not see the exact region's name as I have them for label >>>>>>>>>>> files? >>>>>>>>>>> >>>>>>>>>>> Thanks, >>>>>>>>>>> Faezeh Vedaei >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
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