Re: [ccp4bb] List of 3-letter codes of modified amino acids

For those who do not know, I worked on data processing for the PDB from 1974 to 1998 (entries 15 to ~9000) and we tried to be consistent in representing small modifications to amino acids: modified amino acid vs. standard amino acid plus het group. With the then lack of software tools we strug

Re: [ccp4bb] List of 3-letter codes of modified amino acids

Would it be possible for the PDB to explain the distinction in representation between the case of a modified amino acid and the case of additional atoms bound to the side chain of a standard amino acid. If it is a standard amino acid will the extra atom(s) always be represented as a het group?

Re: [ccp4bb] a dinosaur asks ... PDB format query

The old BNL PDB format documents are available at https://www.wwpdb.org/documentation/file-format I looked at the Feb 1992 document to be certain that my memory was correct [I am 6 days shy of 82 and am reassured that my recollection was,in fact, correct] for information about the representati

Re: [ccp4bb] British X-ray Crystallographers

Many years ago Shoshona Wodak told me that Word kept changing her name to Shoeshine Kodak! At least Garmin is less typing to fix. Frances On 2023-05-24 06:14, Elspeth Garman wrote: Thanks a lot Harry! Unfortunately there is only one of me so it should indeed be ‘man’ not ‘men’, alt

[ccp4bb] three PDB formats, not two

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Re: [ccp4bb] Quote source inquiry

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Re: [ccp4bb] Quote source inquiry

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Re: [ccp4bb] COOT download site

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[ccp4bb] Deliver Your Research Ideas at Crystallography Conference (fwd)

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Re: [ccp4bb] Eleanor interview on Swedish radio

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Re: [ccp4bb] In search of an article

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Re: [ccp4bb] [phenixbb] Calculate average B-factor?

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Re: [ccp4bb] correlated alternate confs - validation?

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Re: [ccp4bb] Protein Crystallography challenges Standard Model precision

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Re: [ccp4bb] Protein Crystallography challenges Standard Model precision

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[ccp4bb] summertime reading

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Re: [ccp4bb] PDB passes 100,000 structure milestone

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[ccp4bb] mailing lists and management therof

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[ccp4bb] how to get off a mailing list

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Re: [ccp4bb] A photograph of the Arndt-Wonacott rotation camera?

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Re: [ccp4bb] OT: "Who's Afraid of Peer Review?"

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Re: [ccp4bb] mmCIF as working format?

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Re: [ccp4bb] modified amino acids in the PDB

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Re: [ccp4bb] Best practice for transformed PDB coordinates?

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Re: [ccp4bb] Who invented PDB format?

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Re: [ccp4bb] Who invented PDB format?

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Re: [ccp4bb] Who invented PDB format?

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Re: [ccp4bb] Off topic: 3D printing of protein models

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Re: [ccp4bb] Stout and Jensen

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Re: [ccp4bb] Stout and Jensen

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Re: [ccp4bb] Nobel Prize 2012

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Re: [ccp4bb] Off topic: Request for a soft copy of a book

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[ccp4bb] mirror symmetry

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Re: [ccp4bb] symmetry for ages 6 and up

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[ccp4bb] article about Vladimir Vand

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Re: [ccp4bb] Vote for Bill !

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Re: [ccp4bb] Definition of B-factor (pedantry)

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Re: [ccp4bb] How to get formfactor for Zn +2.

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Re: [ccp4bb] Mac OSX 10.7 Lion

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Re: [ccp4bb] Check PDB file for missing atoms

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Re: [ccp4bb] research paper

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[ccp4bb]

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[ccp4bb]

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Re: [ccp4bb] what to do with disordered side chains

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Re: [ccp4bb] X-Ray films

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Re: [ccp4bb] X-Ray films

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Re: [ccp4bb] vector and scalars

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Re: [ccp4bb] T N Bhat

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[ccp4bb] offer various newsletters and publications

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Re: [ccp4bb] Method to calculate the axis of an alpha helix

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Re: [ccp4bb] How to get the program "OUTLIAR"?

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Re: [ccp4bb] Introducing PDBprints - salient, at-a-glance info about PDB entries

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Re: [ccp4bb] attachments

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[ccp4bb] Available: Physics Today 1983 - 2010

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Re: [ccp4bb] older ACA Transactions available

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[ccp4bb] older ACA Transactions available

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[ccp4bb] unable to fly?

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Re: [ccp4bb] sequence from pdb

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Re: [ccp4bb] Off topic: Coot and shared libraries

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Re: [ccp4bb] Atom labels in PDB file for Refmac

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Re: [ccp4bb] Non-sequential residue numbering?

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Re: [ccp4bb] Non-sequential residue numbering?

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Re: [ccp4bb] Non-sequential residue numbering?

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Re: [ccp4bb] quote source

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Re: [ccp4bb] rearrange atom order in pdb file

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Re: [ccp4bb] Model ensemble for x-ray crystallography

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Re: [ccp4bb] intersection curve of cone with cylinder

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Re: [ccp4bb] chain IDs and residue numbering in depositing chimeras PDB

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Re: [ccp4bb] pdb-l: Stop the new PDB format!

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