According to the PDB Format document, entries with missing
atoms should have a parsable REMARK 470.  You might want
to write some quick code to look for that REMARK.

The PDB staff could comment about the accuracy of REMARK
470 in its entries.

                           Frances Bernstein

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On Tue, 23 Aug 2011, Pavel Afonine wrote:

Hi Ed,

On Tue, Aug 23, 2011 at 12:39 PM, Ed Pozharski <epozh...@umaryland.edu>
wrote:
       I would be pretty sure there is something like
phinix.which_atoms_are_missing or such :)

 
good idea! I can turn the script that I just sent into this command so it is
available in a couple of days -:)
Pavel.

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