If you want the complete sequence of the material that was
studied, rather than just a list of residues for which there
are coordinates, then the information that you need is on the
SEQRES records. So you could try
grep "^SEQRES"
followed by
cut -c 20-70
with appropriate file names specified. If there is more than
one chain you will need to get fancier in your cut.
Frances Bernstein
=====================================================
**** Bernstein + Sons
* * Information Systems Consultants
**** 5 Brewster Lane, Bellport, NY 11713-2803
* * ***
**** * Frances C. Bernstein
* *** f...@bernstein-plus-sons.com
*** *
* *** 1-631-286-1339 FAX: 1-631-286-1999
=====================================================
On Sun, 4 Apr 2010, Rex Palmer wrote:
Is there software that will extract a protein sequence in either 3 letter or
single letter code from a given pdb file?
Rex Palmer
Birkbeck College
