This is the output: ln: failed to create symbolic link 'lh.white.H': Operation not supported
> On Feb 8, 2017, at 10:38 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote: > > can you run the commands below and tell me what happens? > > cd /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf > ln -s lh.white.preaparc.H lh.white.H > > > On 02/08/2017 09:44 AM, Taylor Hilton wrote: >> Apologies, that was an old log, attaching the relevant one here. >> >> >> >> >>> On Feb 7, 2017, at 6:02 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu> >>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>> wrote: >>> >>> According to the log file, the error is that you need a new license: >>> >>> GNU libc version: 2.23 >>> ERROR: Systems running GNU glibc version greater than 2.15 >>> require a newly formatted license file (it's free). Please >>> download a new one from the following page: >>> *MailScanner has detected a possible fraud attempt from >>> "na01.safelinks.protection.outlook.com >>> <http://na01.safelinks.protection.outlook.com/>" claiming to be* >>> https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=CHwu5i2iSGCh56pKWyVyp3ygYwdOQ0WSEBes26448ro%3D&reserved=0 >>> >>> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=CHwu5i2iSGCh56pKWyVyp3ygYwdOQ0WSEBes26448ro%3D&reserved=0> >>> >>> >>> >>> On 2/7/17 12:49 PM, Taylor Hilton wrote: >>>> Yes I’ll attach it here. I’m using a linux server(Ubuntu). >>>> >>>> >>>> >>>> >>>>> On Feb 7, 2017, at 12:32 PM, Douglas Greve >>>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>>>> <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>> >>>>> wrote: >>>>> >>>>> Can you send the full recon-all.log? What platform are you running on? >>>>> >>>>> >>>>> On 2/7/17 11:19 AM, Taylor Hilton wrote: >>>>>> Hi all, >>>>>> >>>>>> Having trouble with an error running "recon-all -subjid ${i} >>>>>> -autorecon2” across all subjects. >>>>>> >>>>>> Below is where it has the error in recon-all.log. We also tried >>>>>> running the last command (“ln -s …”) manually and got the error >>>>>> “ln: failed to create symbolic link ‘lh.white.H’: Operation not >>>>>> supported.” whereas the rest of the commands ran normally. >>>>>> >>>>>> #-------------------------------------------- >>>>>> #@# Curv .H and .K lh Tue Feb 7 07:29:43 EST 2017 >>>>>> /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf >>>>>> >>>>>> mris_curvature -w lh.white.preaparc >>>>>> >>>>>> total integrated curvature = 18.936*4pi (237.960) --> -18 handles >>>>>> ICI = 230.2, FI = 1697.2, variation=29040.790 >>>>>> writing Gaussian curvature to ./lh.white.preaparc.K...done. >>>>>> writing mean curvature to ./lh.white.preaparc.H...done. >>>>>> rm -f lh.white.H >>>>>> ln -s lh.white.preaparc.H lh.white.H >>>>>> Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC >>>>>> 2017 x86_64 x86_64 x86_64 GNU/Linux >>>>>> >>>>>> recon-all -s 10007 exited with ERRORS at Tue Feb 7 07:29:46 EST 2017 >>>>>> >>>>>> To report a problem, see *MailScanner has detected a possible >>>>>> fraud attempt from "na01.safelinks.protection.outlook.com >>>>>> <http://na01.safelinks.protection.outlook.com/>" >>>>>> claiming to be* >>>>>> https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=Qjbe1jS%2BeKSdSGHHfJQKx%2FFQWrSd5B1ckHOVz9dh%2FmU%3D&reserved=0 >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=Qjbe1jS%2BeKSdSGHHfJQKx%2FFQWrSd5B1ckHOVz9dh%2FmU%3D&reserved=0> >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=4E2gE66k%2B747OnpEjef%2Baz5Z3DQx7Ht6qpqJVFxWom8%3D&reserved=0 >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=4E2gE66k%2B747OnpEjef%2Baz5Z3DQx7Ht6qpqJVFxWom8%3D&reserved=0>> >>>>>> >>>>>> ———————————————————————————————————————————————— >>>>>> >>>>>> >>>>>> We also tried the solution laid out in this thread with no luck: >>>>>> *MailScanner has detected a possible fraud attempt from >>>>>> "na01.safelinks.protection.outlook.com >>>>>> <http://na01.safelinks.protection.outlook.com/>" claiming to be* >>>>>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=KAGwvmXgr4Zkz%2FWWQAdxAzIrjRurig4783AvKVU3lGs%3D&reserved=0 >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=KAGwvmXgr4Zkz%2FWWQAdxAzIrjRurig4783AvKVU3lGs%3D&reserved=0> >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=zqIKnda0hwYWkR7BguoviwK2l8Vy3aJzjBXabpTb1Zc%3D&reserved=0 >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=zqIKnda0hwYWkR7BguoviwK2l8Vy3aJzjBXabpTb1Zc%3D&reserved=0>> >>>>>> >>>>>> Any help is very appreciated! >>>>>> >>>>>> - B. Taylor Hilton >>>>>> Lab Data Coordinator, University of Pittsburgh >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>>> *MailScanner has detected a possible fraud attempt from >>>>>> "na01.safelinks.protection.outlook.com >>>>>> <http://na01.safelinks.protection.outlook.com/>" claiming to be* >>>>>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0 >>>>>> >>>>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>>>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=rMwRhzyVVLgwIerQL2z4tKX3Y%2BTWK8f95hV%2BFDOy9jU%3D&reserved=0 >>>>> >>>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=rMwRhzyVVLgwIerQL2z4tKX3Y%2BTWK8f95hV%2BFDOy9jU%3D&reserved=0> >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to >>>>> whom it is >>>>> addressed. If you believe this e-mail was sent to you in error and >>>>> the e-mail >>>>> contains patient information, please contact the Partners >>>>> Compliance HelpLine at >>>>> https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=O7LEC11YKLAAdxlwf%2FnE%2FGotg8Mx%2FZ%2FTFsxFkiLp51k%3D&reserved=0 >>>>> >>>>> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=O7LEC11YKLAAdxlwf%2FnE%2FGotg8Mx%2FZ%2FTFsxFkiLp51k%3D&reserved=0> >>>>> >>>>> . If the e-mail was sent to you in error >>>>> but does not contain patient information, please contact the sender >>>>> and properly >>>>> dispose of the e-mail. >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> *MailScanner has detected a possible fraud attempt from >>>> "na01.safelinks.protection.outlook.com >>>> <http://na01.safelinks.protection.outlook.com/>" claiming to be* >>>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0 >>>> >>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> <mailto:Freesurfer@nmr.mgh.harvard.edu >>> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7Cc8e46b2994ca49debee208d44fad662b%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=yfYwwDNry%2BGoMySns7kCsbt9Ic2rtsg5n6EbGoVKns4%3D&reserved=0 >>> >>> >>> The information in this e-mail is intended only for the person to >>> whom it is >>> addressed. If you believe this e-mail was sent to you in error and >>> the e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7Cc8e46b2994ca49debee208d44fad662b%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=9dYnAa512iQ6uvvREzErCBLRULu307062nA7Cy67NX8%3D&reserved=0 >>> >>> . If the e-mail was sent to you in error >>> but does not contain patient information, please contact the sender >>> and properly >>> dispose of the e-mail. >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0 >> >> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Ffiledrop2&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=47c9a5A22BZzOGWVJ8w8mpOzxu6OIe1SgxroQ1oItUc%3D&reserved=0 > > <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgate.nmr.mgh.harvard.edu%2Ffiledrop2&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=47c9a5A22BZzOGWVJ8w8mpOzxu6OIe1SgxroQ1oItUc%3D&reserved=0> > https://na01.safelinks.protection.outlook.com/?url=www.nmr.mgh.harvard.edu%2Ffacility%2Ffiledrop%2Findex.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=J7ilrO%2FDm9hsxhrbdaiMVikmqtcApG2glBvuy0g4HrY%3D&reserved=0 > > <https://na01.safelinks.protection.outlook.com/?url=www.nmr.mgh.harvard.edu%2Ffacility%2Ffiledrop%2Findex.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=J7ilrO%2FDm9hsxhrbdaiMVikmqtcApG2glBvuy0g4HrY%3D&reserved=0> > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0 > > <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=MaKPpAr8L5RV8dPvDIvnAwP%2F1k3l2aICtvrcK%2Bp7MYs%3D&reserved=0> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=yY8XdJcwSmaYZUob7J%2FC6crTRMfyKIASmEa%2BYPedGyw%3D&reserved=0 > > <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=yY8XdJcwSmaYZUob7J%2FC6crTRMfyKIASmEa%2BYPedGyw%3D&reserved=0> > . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
