can you run the commands below and tell me what happens? cd /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf ln -s lh.white.preaparc.H lh.white.H
On 02/08/2017 09:44 AM, Taylor Hilton wrote: > Apologies, that was an old log, attaching the relevant one here. > > > > >> On Feb 7, 2017, at 6:02 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> >> According to the log file, the error is that you need a new license: >> >> GNU libc version: 2.23 >> ERROR: Systems running GNU glibc version greater than 2.15 >> require a newly formatted license file (it's free). Please >> download a new one from the following page: >> *MailScanner has detected a possible fraud attempt from >> "na01.safelinks.protection.outlook.com" claiming to be* >> http://surfer.nmr.mgh.harvard.edu/registration.html >> >> >> >> On 2/7/17 12:49 PM, Taylor Hilton wrote: >>> Yes I’ll attach it here. I’m using a linux server(Ubuntu). >>> >>> >>> >>> >>>> On Feb 7, 2017, at 12:32 PM, Douglas Greve >>>> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >>>> >>>> Can you send the full recon-all.log? What platform are you running on? >>>> >>>> >>>> On 2/7/17 11:19 AM, Taylor Hilton wrote: >>>>> Hi all, >>>>> >>>>> Having trouble with an error running "recon-all -subjid ${i} >>>>> -autorecon2” across all subjects. >>>>> >>>>> Below is where it has the error in recon-all.log. We also tried >>>>> running the last command (“ln -s …”) manually and got the error >>>>> “ln: failed to create symbolic link ‘lh.white.H’: Operation not >>>>> supported.” whereas the rest of the commands ran normally. >>>>> >>>>> #-------------------------------------------- >>>>> #@# Curv .H and .K lh Tue Feb 7 07:29:43 EST 2017 >>>>> /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf >>>>> >>>>> mris_curvature -w lh.white.preaparc >>>>> >>>>> total integrated curvature = 18.936*4pi (237.960) --> -18 handles >>>>> ICI = 230.2, FI = 1697.2, variation=29040.790 >>>>> writing Gaussian curvature to ./lh.white.preaparc.K...done. >>>>> writing mean curvature to ./lh.white.preaparc.H...done. >>>>> rm -f lh.white.H >>>>> ln -s lh.white.preaparc.H lh.white.H >>>>> Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC >>>>> 2017 x86_64 x86_64 x86_64 GNU/Linux >>>>> >>>>> recon-all -s 10007 exited with ERRORS at Tue Feb 7 07:29:46 EST 2017 >>>>> >>>>> To report a problem, see *MailScanner has detected a possible >>>>> fraud attempt from "na01.safelinks.protection.outlook.com" >>>>> claiming to be* >>>>> http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> <https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=4E2gE66k%2B747OnpEjef%2Baz5Z3DQx7Ht6qpqJVFxWom8%3D&reserved=0> >>>>> >>>>> ———————————————————————————————————————————————— >>>>> >>>>> >>>>> We also tried the solution laid out in this thread with no luck: >>>>> *MailScanner has detected a possible fraud attempt from >>>>> "na01.safelinks.protection.outlook.com" claiming to be* >>>>> https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-September/040473.html >>>>> >>>>> <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=zqIKnda0hwYWkR7BguoviwK2l8Vy3aJzjBXabpTb1Zc%3D&reserved=0> >>>>> >>>>> Any help is very appreciated! >>>>> >>>>> - B. Taylor Hilton >>>>> Lab Data Coordinator, University of Pittsburgh >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> *MailScanner has detected a possible fraud attempt from >>>>> "na01.safelinks.protection.outlook.com" claiming to be* >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=rMwRhzyVVLgwIerQL2z4tKX3Y%2BTWK8f95hV%2BFDOy9jU%3D&reserved=0 >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=O7LEC11YKLAAdxlwf%2FnE%2FGotg8Mx%2FZ%2FTFsxFkiLp51k%3D&reserved=0 >>>> >>>> . If the e-mail was sent to you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> *MailScanner has detected a possible fraud attempt from >>> "na01.safelinks.protection.outlook.com" claiming to be* >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7CBTH22%40pitt.edu%7Cc8e46b2994ca49debee208d44fad662b%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=yfYwwDNry%2BGoMySns7kCsbt9Ic2rtsg5n6EbGoVKns4%3D&reserved=0 >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.partners.org%2Fcomplianceline&data=01%7C01%7CBTH22%40pitt.edu%7Cc8e46b2994ca49debee208d44fad662b%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=9dYnAa512iQ6uvvREzErCBLRULu307062nA7Cy67NX8%3D&reserved=0 >> >> . If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
