| Yes I’ll attach it here. I’m using a linux server(Ubuntu).
|
recon-all.log
Description: Binary data
Can you send the full recon-all.log? What platform are you
running on?
On 2/7/17 11:19 AM, Taylor Hilton
wrote:
Hi all,
Having trouble with an error running "recon-all
-subjid ${i} -autorecon2” across all subjects.
Below is where it has the error in recon-all.log.
We also tried running the last command (“ln -s …”) manually
and got the error “ln: failed to create symbolic link
‘lh.white.H’: Operation not supported.” whereas the rest of
the commands ran normally.
#--------------------------------------------
#@# Curv .H and .K lh Tue Feb 7 07:29:43 EST
2017
/home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf
mris_curvature -w lh.white.preaparc
total integrated curvature = 18.936*4pi
(237.960) --> -18 handles
ICI = 230.2, FI = 1697.2, variation=29040.790
writing Gaussian curvature to
./lh.white.preaparc.K...done.
writing mean curvature to
./lh.white.preaparc.H...done.
rm -f lh.white.H
ln -s lh.white.preaparc.H lh.white.H
Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri
Jan 6 17:47:47 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 10007 exited with ERRORS at Tue Feb
7 07:29:46 EST 2017
————————————————————————————————————————————————
We also tried the solution laid out in this thread
with no luck:
Any help is very appreciated!
- B. Taylor Hilton
Lab Data Coordinator, University of Pittsburgh
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "na01.safelinks.protection.outlook.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://na01.safelinks.protection.outlook.com/?url="" class="">
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
https://na01.safelinks.protection.outlook.com/?url="" . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
|
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
