Hi all,
Having trouble with an error running "recon-all -subjid ${i} -autorecon2”
across all subjects.
Below is where it has the error in recon-all.log. We also tried running the
last command (“ln -s …”) manually and got the error “ln: failed to create
symbolic link ‘lh.white.H’: Operation not supported.” whereas the rest of the
commands ran normally.
#--------------------------------------------
#@# Curv .H and .K lh Tue Feb 7 07:29:43 EST 2017
/home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf
mris_curvature -w lh.white.preaparc
total integrated curvature = 18.936*4pi (237.960) --> -18 handles
ICI = 230.2, FI = 1697.2, variation=29040.790
writing Gaussian curvature to ./lh.white.preaparc.K...done.
writing mean curvature to ./lh.white.preaparc.H...done.
rm -f lh.white.H
ln -s lh.white.preaparc.H lh.white.H
Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64
x86_64 x86_64 GNU/Linux
recon-all -s 10007 exited with ERRORS at Tue Feb 7 07:29:46 EST 2017
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
————————————————————————————————————————————————
We also tried the solution laid out in this thread with no luck:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-September/040473.html
<https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-September/040473.html>
Any help is very appreciated!
- B. Taylor Hilton
Lab Data Coordinator, University of Pittsburgh
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