Absolutely, I've contacted them about it, and if it is not the right one, I can use the other. There are only 2 frames so I can narrow it down at least.
Marissa On Mon, Feb 22, 2016 at 3:46 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > But is that the right frame to use? I would check with whoever collected > the data and get it sorted out before diving into an analysis. > > On 02/22/2016 02:34 PM, Marissa Pifer wrote: > > Bruce, > > > > I'm not sure why it has multiple frames. It was a spin echo, T1 > > weighted structural MRI. I input the command you suggested and > > recon-all is running now. > > > > Thank you for your help! > > > > Marissa > > > > On Mon, Feb 22, 2016 at 12:24 PM, Bruce Fischl > > <fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > > > Hi Marissa > > > > why does it have multiple frames? What kind of acquisition was it? > > If you know which frame is the correct one you can always extract > > it, for example > > > > cd /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig > > mv 001.mgz two_frames.mgz > > mri_convert -nth 0 two_frames.mgz 001.mgz > > > > Bruce > > > > > > On Mon, 22 Feb 2016, Marissa Pifer wrote: > > > > Hi freesurfers, > > I am trying to run the recon-all command on a T1 weighted > > structural image for one of my subjects and I keep getting > > this error > > > > "Checking for (invalid) multi-frame inputs... > > > > ERROR: input(s) cannot have multiple frames! > > > > > /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig/001.mgz > > has 2 frames > > > > Darwin Marcs-MacBook-Pro.local 13.4.0 Darwin Kernel Version > > 13.4.0: Sun Aug 17 19:50:11 PDT 2014; > > root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 > > > > > > recon-all -s SOAR26-1 exited with ERRORS at Mon Feb 22 > > 11:13:26 EST 2016" > > > > > > I looked through the mailing list and saw that a few other > > people have had this problem as well, and I tried some of the > > solutions that were suggested but still have not been able to > > get past this. I have run the recon-all command on all of the > > other subjects in our data set, and none of them have this > > problem. Not sure what is different about this scan. > > > > > > Anyone run into this problem and were able to fix it? > > > > > > Thanks in advance, > > > > > > Marissa > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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