Hi Marissa
why does it have multiple frames? What kind of acquisition was it? If you
know which frame is the correct one you can always extract it, for example
cd /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig
mv 001.mgz two_frames.mgz
mri_convert -nth 0 two_frames.mgz 001.mgz
Bruce
On Mon,
22 Feb 2016, Marissa Pifer wrote:
Hi freesurfers,
I am trying to run the recon-all command on a T1 weighted structural image for
one of my subjects and I keep getting this error
"Checking for (invalid) multi-frame inputs...
ERROR: input(s) cannot have multiple frames!
/Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig/001.mgz has 2
frames
Darwin Marcs-MacBook-Pro.local 13.4.0 Darwin Kernel Version 13.4.0: Sun Aug 17
19:50:11 PDT 2014;
root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64
recon-all -s SOAR26-1 exited with ERRORS at Mon Feb 22 11:13:26 EST 2016"
I looked through the mailing list and saw that a few other people have had this
problem as well, and I tried some of the
solutions that were suggested but still have not been able to get past this. I
have run the recon-all command on all of the
other subjects in our data set, and none of them have this problem. Not sure
what is different about this scan.
Anyone run into this problem and were able to fix it?
Thanks in advance,
Marissa
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