But is that the right frame to use? I would check with whoever collected the data and get it sorted out before diving into an analysis.
On 02/22/2016 02:34 PM, Marissa Pifer wrote: > Bruce, > > I'm not sure why it has multiple frames. It was a spin echo, T1 > weighted structural MRI. I input the command you suggested and > recon-all is running now. > > Thank you for your help! > > Marissa > > On Mon, Feb 22, 2016 at 12:24 PM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > Hi Marissa > > why does it have multiple frames? What kind of acquisition was it? > If you know which frame is the correct one you can always extract > it, for example > > cd /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig > mv 001.mgz two_frames.mgz > mri_convert -nth 0 two_frames.mgz 001.mgz > > Bruce > > > On Mon, 22 Feb 2016, Marissa Pifer wrote: > > Hi freesurfers, > I am trying to run the recon-all command on a T1 weighted > structural image for one of my subjects and I keep getting > this error > > "Checking for (invalid) multi-frame inputs... > > ERROR: input(s) cannot have multiple frames! > > > /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig/001.mgz > has 2 frames > > Darwin Marcs-MacBook-Pro.local 13.4.0 Darwin Kernel Version > 13.4.0: Sun Aug 17 19:50:11 PDT 2014; > root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 > > > recon-all -s SOAR26-1 exited with ERRORS at Mon Feb 22 > 11:13:26 EST 2016" > > > I looked through the mailing list and saw that a few other > people have had this problem as well, and I tried some of the > solutions that were suggested but still have not been able to > get past this. I have run the recon-all command on all of the > other subjects in our data set, and none of them have this > problem. Not sure what is different about this scan. > > > Anyone run into this problem and were able to fix it? > > > Thanks in advance, > > > Marissa > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
