Each input file should have one frame. What sequence did you run on the scanner? This usually happens when someone collected a multiecho mprage. If so, then compute the rms of the multiple echoes and run recon-all on that
On 02/22/2016 11:29 AM, Marissa Pifer wrote: > Hi freesurfers, > > I am trying to run the recon-all command on a T1 weighted structural > image for one of my subjects and I keep getting this error > > "Checking for (invalid) multi-frame inputs... > > ERROR: input(s) cannot have multiple frames! > > /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig/001.mgz > has 2 frames > > Darwin Marcs-MacBook-Pro.local 13.4.0 Darwin Kernel Version 13.4.0: > Sun Aug 17 19:50:11 PDT 2014; root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 > > > recon-all -s SOAR26-1 exited with ERRORS at Mon Feb 22 11:13:26 EST 2016" > > > I looked through the mailing list and saw that a few other people have > had this problem as well, and I tried some of the solutions that were > suggested but still have not been able to get past this. I have run > the recon-all command on all of the other subjects in our data set, > and none of them have this problem. Not sure what is different about > this scan. > > > Anyone run into this problem and were able to fix it? > > > Thanks in advance, > > > Marissa > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
