Bruce, I'm not sure why it has multiple frames. It was a spin echo, T1 weighted structural MRI. I input the command you suggested and recon-all is running now.
Thank you for your help! Marissa On Mon, Feb 22, 2016 at 12:24 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Marissa > > why does it have multiple frames? What kind of acquisition was it? If you > know which frame is the correct one you can always extract it, for example > > cd /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig > mv 001.mgz two_frames.mgz > mri_convert -nth 0 two_frames.mgz 001.mgz > > Bruce > > > On Mon, 22 Feb 2016, Marissa Pifer wrote: > > Hi freesurfers, >> I am trying to run the recon-all command on a T1 weighted structural >> image for one of my subjects and I keep getting this error >> >> "Checking for (invalid) multi-frame inputs... >> >> ERROR: input(s) cannot have multiple frames! >> >> /Users/marchaut/Documents/myprojects/SOARmaster/SOAR26-1/mri/orig/001.mgz >> has 2 frames >> >> Darwin Marcs-MacBook-Pro.local 13.4.0 Darwin Kernel Version 13.4.0: Sun >> Aug 17 19:50:11 PDT 2014; >> root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 >> >> >> recon-all -s SOAR26-1 exited with ERRORS at Mon Feb 22 11:13:26 EST 2016" >> >> >> I looked through the mailing list and saw that a few other people have >> had this problem as well, and I tried some of the >> solutions that were suggested but still have not been able to get past >> this. I have run the recon-all command on all of the >> other subjects in our data set, and none of them have this problem. Not >> sure what is different about this scan. >> >> >> Anyone run into this problem and were able to fix it? >> >> >> Thanks in advance, >> >> >> Marissa >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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