It is hard to say, since 4.5 came out 3 years ago:). It is ok to do 
group analysis in a different version of FS.
doug
ps. Please remember to copy the list instead of sending emails directly 
to us. thanks!


On 07/02/2013 01:53 PM, Emily Boeke wrote:
> Strange, I have run simulations before in 4.5 and gotten talairach coords. 
> Are you sure there isn't any other reason the coordinates are in this format 
> in this simulation?
>
> Is it generally ok to do a group analysis in a later version of freesurfer if 
> the first level analyses have been done in 4.5? Or would you recommend 
> redoing the individual analyses as well?
>
> Thanks!
> Emily
>
> On Jul 2, 2013, at 12:18 PM, Douglas N Greve wrote:
>
>> OK, in later versions it will give you the talairach coords. I would
>> download 5.3 and run your group analysis in that, just be careful not to
>> run recon-all using 5.3 (unless you want to upgrade all your subjects).
>> doug
>>
>> On 07/02/2013 11:48 AM, Emily Boeke wrote:
>>> 4.5
>>>
>>> Emily
>>> On Jul 2, 2013, at 11:45 AM, Douglas N Greve wrote:
>>>
>>>> Hi Emily, what version of FS are you using?
>>>> doug
>>>>
>>>>
>>>> On 07/02/2013 11:41 AM, Emily Boeke wrote:
>>>>> Hi Doug,
>>>>>
>>>>> Sorry to be overly persistent, but I just wanted to make sure you saw 
>>>>> this email!
>>>>>
>>>>> Thanks,
>>>>> Emily
>>>>>
>>>>> On Jul 1, 2013, at 9:20 AM, Emily Boeke wrote:
>>>>>
>>>>>> This was the command I ran:
>>>>>>
>>>>>> mri_glmfit-sim --glmdir tal.sm.wls.pct.rfx --sim mc-z 10000 2 
>>>>>> HvL.SBQ.2.10000.pos  --stim-sign pos
>>>>>>
>>>>>> On Jun 28, 2013, at 3:29 PM, Douglas N Greve wrote:
>>>>>>
>>>>>>> Hi Emily, what is your mri_glmfit-sim command line?
>>>>>>> doug
>>>>>>>
>>>>>>>
>>>>>>> On 06/28/2013 02:40 PM, Emily Boeke wrote:
>>>>>>>> Any thoughts on why this file turned out this way?
>>>>>>>>
>>>>>>>> Thanks!
>>>>>>>> Emily
>>>>>>>>
>>>>>>>> On Jun 26, 2013, at 8:09 AM, Emily Boeke wrote:
>>>>>>>>
>>>>>>>>> Sure, here it is:
>>>>>>>>>
>>>>>>>>> # Cluster Growing Summary (mri_volcluster)
>>>>>>>>> # $Id: mri_volcluster.c,v 1.38.2.3 2009/01/16 02:26:36 greve Exp $
>>>>>>>>> # cwd 
>>>>>>>>> /autofs/cluster/maury/users/gcoombs/College_Risk/ObjectLooming/allSBQ_061213/st4-obj_ns-4runs/face_v_car
>>>>>>>>> # cmdline mri_volcluster --in tal.sm.wls.pct.rfx//group/sig.mgh --csd 
>>>>>>>>> tal.sm.wls.pct.rfx//csd/HvL.SBQ.2.pos.j001-group.csd --mask 
>>>>>>>>> tal.sm.wls.pct.rfx//mask.mgh --cwsig 
>>>>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.mgh --vwsig 
>>>>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.voxel.mgh --sum 
>>>>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.summary --ocn 
>>>>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.ocn.mgh --csdpdf 
>>>>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.pdf.dat
>>>>>>>>> # sysname  Linux
>>>>>>>>> # hostname compute-0-114
>>>>>>>>> # machine  x86_64
>>>>>>>>> # user     eboeke01
>>>>>>>>> # Input Volume:      tal.sm.wls.pct.rfx//group/sig.mgh
>>>>>>>>> # Frame Number:      0
>>>>>>>>> # Minimum Threshold: 2
>>>>>>>>> # Maximum Threshold: inifinity
>>>>>>>>> # Threshold Sign:    pos
>>>>>>>>> # AdjustThreshWhenOneTail 1
>>>>>>>>> # Size Threshold:    0 mm^3
>>>>>>>>> # Size Threshold:    0 voxels
>>>>>>>>> # Voxel Size:        8 mm^3
>>>>>>>>> # Registration:      None : Tal Coords invalid
>>>>>>>>> # Mask Vol:          tal.sm.wls.pct.rfx//mask.mgh
>>>>>>>>> # Mask Thresh:       0.500000
>>>>>>>>> # Mask Sign:         abs
>>>>>>>>> # Mask Invert:       0
>>>>>>>>> # AllowDiag:         0
>>>>>>>>> # NClusters          192
>>>>>>>>> # CSD thresh  2.000000
>>>>>>>>> # CSD nreps    10000
>>>>>>>>> # CSD simtype  mc-z
>>>>>>>>> # CSD contrast group
>>>>>>>>> # CSD confint  90.000000
>>>>>>>>> #
>>>>>>>>> # Reporting Coordinates in Voxel Indices
>>>>>>>>> # Cluster   Size(n)   Size(mm^3)       VoxX   VoxY    VoxZ            
>>>>>>>>>   Max#    CWP    CWPLow    CWPHi
>>>>>>>>>   1         597       4776.0      30.00   50.00   65.00           
>>>>>>>>> 5.94673  0.02490  0.02290  0.02690
>>>>>>>>>   2         730       5840.0      27.00   28.00   86.00           
>>>>>>>>> 5.56628  0.00720  0.00610  0.00830
>>>>>>>>>   3        1124       8992.0       5.00   18.00   38.00           
>>>>>>>>> 5.01850  0.00010  0.00000  0.00020
>>>>>>>>>   4         259       2072.0      59.00   20.00   78.00           
>>>>>>>>> 5.01465  0.68360  0.67760  0.68960
>>>>>>>>>   5         279       2232.0      18.00   22.00   73.00           
>>>>>>>>> 3.94952  0.58840  0.58210  0.59470
>>>>>>>>>   6         194       1552.0      35.00   66.00   76.00           
>>>>>>>>> 3.94297  0.93630  0.93320  0.93940
>>>>>>>>>   7         664       5312.0      32.00   15.00   60.00           
>>>>>>>>> 3.68551  0.01400  0.01250  0.01550
>>>>>>>>>   8         293       2344.0      28.00    5.00   58.00           
>>>>>>>>> 3.66686  0.52560  0.51920  0.53200
>>>>>>>>>   9          49        392.0      12.00   52.00   58.00           
>>>>>>>>> 3.63351  1.00000  -0.00010  1.00000
>>>>>>>>> 10         150       1200.0       5.00    4.00   28.00           
>>>>>>>>> 3.62637  0.99560  0.99470  0.99640
>>>>>>>>> 11         298       2384.0      12.00   47.00   86.00           
>>>>>>>>> 3.58250  0.50260  0.49620  0.50900
>>>>>>>>> 12         343       2744.0      13.00   39.00   60.00           
>>>>>>>>> 3.57829  0.33900  0.33290  0.34510
>>>>>>>>> 13         467       3736.0      21.00   42.00   49.00           
>>>>>>>>> 3.53307  0.09590  0.09210  0.09970
>>>>>>>>> 14         276       2208.0      49.00   36.00   56.00           
>>>>>>>>> 3.51549  0.60280  0.59650  0.60910
>>>>>>>>> 15         134       1072.0      70.00   17.00   34.00           
>>>>>>>>> 3.38623  0.99890  0.99850  0.99930
>>>>>>>>> 16          75        600.0       5.00   25.00   55.00           
>>>>>>>>> 3.09334  1.00000  -0.00010  1.00000
>>>>>>>>> 17          74        592.0      13.00   10.00   49.00           
>>>>>>>>> 3.03017  1.00000  -0.00010  1.00000
>>>>>>>>> 18          45        360.0      65.00   39.00   62.00           
>>>>>>>>> 3.00205  1.00000  -0.00010  1.00000
>>>>>>>>> 19          15        120.0      72.00    7.00   42.00           
>>>>>>>>> 2.96283  1.00000  -0.00010  1.00000
>>>>>>>>> 20          55        440.0      62.00    9.00   23.00           
>>>>>>>>> 2.93121  1.00000  -0.00010  1.00000
>>>>>>>>> 21          79        632.0      46.00   60.00   87.00           
>>>>>>>>> 2.92199  1.00000  -0.00010  1.00000
>>>>>>>>> 22          35        280.0       2.00   41.00   48.00           
>>>>>>>>> 2.84065  1.00000  -0.00010  1.00000
>>>>>>>>> 23          44        352.0       6.00   35.00   27.00           
>>>>>>>>> 2.80109  1.00000  -0.00010  1.00000
>>>>>>>>> 24          14        112.0      50.00    3.00   54.00           
>>>>>>>>> 2.75399  1.00000  -0.00010  1.00000
>>>>>>>>> 25          71        568.0       0.00   22.00    9.00           
>>>>>>>>> 2.75160  1.00000  -0.00010  1.00000
>>>>>>>>> 26           5         40.0      28.00    0.00   36.00           
>>>>>>>>> 2.72535  1.00000  -0.00010  1.00000
>>>>>>>>> 27         130       1040.0      40.00    1.00   45.00           
>>>>>>>>> 2.71826  0.99920  0.99880  0.99950
>>>>>>>>> 28          81        648.0      33.00   61.00   86.00           
>>>>>>>>> 2.70040  1.00000  -0.00010  1.00000
>>>>>>>>> 29          73        584.0      67.00   26.00   52.00           
>>>>>>>>> 2.68744  1.00000  -0.00010  1.00000
>>>>>>>>> 30          16        128.0      64.00   48.00   72.00           
>>>>>>>>> 2.67636  1.00000  -0.00010  1.00000
>>>>>>>>> 31          28        224.0      75.00   35.00   88.00           
>>>>>>>>> 2.65193  1.00000  -0.00010  1.00000
>>>>>>>>> 32          11         88.0      15.00   21.00   82.00           
>>>>>>>>> 2.61771  1.00000  -0.00010  1.00000
>>>>>>>>> 33           5         40.0      45.00    0.00   27.00           
>>>>>>>>> 2.61424  1.00000  -0.00010  1.00000
>>>>>>>>> 34          16        128.0       9.00   13.00   70.00           
>>>>>>>>> 2.58842  1.00000  -0.00010  1.00000
>>>>>>>>> 35          23        184.0      15.00   27.00   48.00           
>>>>>>>>> 2.57410  1.00000  -0.00010  1.00000
>>>>>>>>> 36          28        224.0      15.00   31.00   44.00           
>>>>>>>>> 2.57219  1.00000  -0.00010  1.00000
>>>>>>>>> 37          23        184.0      29.00   56.00   78.00           
>>>>>>>>> 2.55890  1.00000  -0.00010  1.00000
>>>>>>>>> 38           7         56.0       0.00   42.00   92.00           
>>>>>>>>> 2.55525  1.00000  -0.00010  1.00000
>>>>>>>>> 39          49        392.0      52.00   40.00   88.00           
>>>>>>>>> 2.54894  1.00000  -0.00010  1.00000
>>>>>>>>> 40          42        336.0       7.00   31.00   63.00           
>>>>>>>>> 2.52160  1.00000  -0.00010  1.00000
>>>>>>>>> 41          37        296.0      22.00   43.00   81.00           
>>>>>>>>> 2.50557  1.00000  -0.00010  1.00000
>>>>>>>>> 42          21        168.0      22.00   58.00   72.00           
>>>>>>>>> 2.49912  1.00000  -0.00010  1.00000
>>>>>>>>> 43          32        256.0      59.00   45.00   91.00           
>>>>>>>>> 2.44918  1.00000  -0.00010  1.00000
>>>>>>>>> 44          12         96.0      31.00   29.00   36.00           
>>>>>>>>> 2.42939  1.00000  -0.00010  1.00000
>>>>>>>>> 45          50        400.0      14.00   34.00   26.00           
>>>>>>>>> 2.42102  1.00000  -0.00010  1.00000
>>>>>>>>> 46          22        176.0       6.00   15.00   55.00           
>>>>>>>>> 2.41349  1.00000  -0.00010  1.00000
>>>>>>>>> 47          12         96.0       9.00   43.00   42.00           
>>>>>>>>> 2.40593  1.00000  -0.00010  1.00000
>>>>>>>>> 48          27        216.0      64.00   17.00   31.00           
>>>>>>>>> 2.38351  1.00000  -0.00010  1.00000
>>>>>>>>> 49          16        128.0      25.00   49.00   81.00           
>>>>>>>>> 2.37500  1.00000  -0.00010  1.00000
>>>>>>>>> 50          37        296.0      12.00   18.00   54.00           
>>>>>>>>> 2.36836  1.00000  -0.00010  1.00000
>>>>>>>>> 51          22        176.0      43.00   50.00   63.00           
>>>>>>>>> 2.35072  1.00000  -0.00010  1.00000
>>>>>>>>> 52          39        312.0      31.00   39.00   46.00           
>>>>>>>>> 2.31633  1.00000  -0.00010  1.00000
>>>>>>>>> 53           7         56.0      75.00   60.00   84.00           
>>>>>>>>> 2.28945  1.00000  -0.00010  1.00000
>>>>>>>>> 54           6         48.0      33.00   25.00   67.00           
>>>>>>>>> 2.28154  1.00000  -0.00010  1.00000
>>>>>>>>> 55          10         80.0      49.00   40.00   33.00           
>>>>>>>>> 2.27301  1.00000  -0.00010  1.00000
>>>>>>>>> 56          13        104.0      26.00   65.00   88.00           
>>>>>>>>> 2.27017  1.00000  -0.00010  1.00000
>>>>>>>>> 57           6         48.0      13.00   25.00   26.00           
>>>>>>>>> 2.26583  1.00000  -0.00010  1.00000
>>>>>>>>> 58          15        120.0      54.00    9.00   20.00           
>>>>>>>>> 2.25868  1.00000  -0.00010  1.00000
>>>>>>>>> 59          16        128.0      63.00   14.00   19.00           
>>>>>>>>> 2.21490  1.00000  -0.00010  1.00000
>>>>>>>>> 60           4         32.0       9.00   25.00   61.00           
>>>>>>>>> 2.21056  1.00000  -0.00010  1.00000
>>>>>>>>> 61          37        296.0      25.00   37.00   62.00           
>>>>>>>>> 2.21055  1.00000  -0.00010  1.00000
>>>>>>>>> 62          10         80.0      59.00   51.00   51.00           
>>>>>>>>> 2.20982  1.00000  -0.00010  1.00000
>>>>>>>>> 63          20        160.0      66.00   41.00   51.00           
>>>>>>>>> 2.19863  1.00000  -0.00010  1.00000
>>>>>>>>> 64           2         16.0      53.00   66.00   72.00           
>>>>>>>>> 2.18410  1.00000  -0.00010  1.00000
>>>>>>>>> 65           9         72.0      37.00   38.00   66.00           
>>>>>>>>> 2.17739  1.00000  -0.00010  1.00000
>>>>>>>>> 66           6         48.0       6.00   44.00   62.00           
>>>>>>>>> 2.17461  1.00000  -0.00010  1.00000
>>>>>>>>> 67          39        312.0      50.00   35.00   70.00           
>>>>>>>>> 2.16322  1.00000  -0.00010  1.00000
>>>>>>>>> 68          11         88.0      52.00    6.00   21.00           
>>>>>>>>> 2.16002  1.00000  -0.00010  1.00000
>>>>>>>>> 69           6         48.0      26.00    0.00   43.00           
>>>>>>>>> 2.15030  1.00000  -0.00010  1.00000
>>>>>>>>> 70           8         64.0      41.00   16.00   19.00           
>>>>>>>>> 2.14875  1.00000  -0.00010  1.00000
>>>>>>>>> 71           4         32.0      51.00    8.00   39.00           
>>>>>>>>> 2.14592  1.00000  -0.00010  1.00000
>>>>>>>>> 72           3         24.0      47.00    9.00   21.00           
>>>>>>>>> 2.14285  1.00000  -0.00010  1.00000
>>>>>>>>> 73           8         64.0      67.00   19.00   27.00           
>>>>>>>>> 2.14034  1.00000  -0.00010  1.00000
>>>>>>>>> 74          12         96.0       3.00   59.00   86.00           
>>>>>>>>> 2.13879  1.00000  -0.00010  1.00000
>>>>>>>>> 75           3         24.0      15.00    6.00   19.00           
>>>>>>>>> 2.13024  1.00000  -0.00010  1.00000
>>>>>>>>> 76           9         72.0      59.00   41.00   41.00           
>>>>>>>>> 2.12204  1.00000  -0.00010  1.00000
>>>>>>>>> 77          18        144.0      35.00   48.00   55.00           
>>>>>>>>> 2.10334  1.00000  -0.00010  1.00000
>>>>>>>>> 78           6         48.0      40.00   57.00   92.00           
>>>>>>>>> 2.08841  1.00000  -0.00010  1.00000
>>>>>>>>> 79           7         56.0      43.00    1.00   17.00           
>>>>>>>>> 2.07371  1.00000  -0.00010  1.00000
>>>>>>>>> 80           6         48.0      41.00   55.00   69.00           
>>>>>>>>> 2.07007  1.00000  -0.00010  1.00000
>>>>>>>>> 81          14        112.0      23.00   35.00   88.00           
>>>>>>>>> 2.06307  1.00000  -0.00010  1.00000
>>>>>>>>> 82          11         88.0      40.00   73.00   82.00           
>>>>>>>>> 2.05213  1.00000  -0.00010  1.00000
>>>>>>>>> 83           5         40.0      39.00   19.00   51.00           
>>>>>>>>> 2.04809  1.00000  -0.00010  1.00000
>>>>>>>>> 84          10         80.0      38.00   24.00   69.00           
>>>>>>>>> 2.04252  1.00000  -0.00010  1.00000
>>>>>>>>> 85           9         72.0      30.00   32.00   67.00           
>>>>>>>>> 2.04237  1.00000  -0.00010  1.00000
>>>>>>>>> 86           7         56.0      54.00   58.00   72.00           
>>>>>>>>> 2.03645  1.00000  -0.00010  1.00000
>>>>>>>>> 87          10         80.0      30.00   13.00   22.00           
>>>>>>>>> 2.03577  1.00000  -0.00010  1.00000
>>>>>>>>> 88           8         64.0       0.00   25.00   72.00           
>>>>>>>>> 2.03193  1.00000  -0.00010  1.00000
>>>>>>>>> 89           5         40.0       7.00   23.00    6.00           
>>>>>>>>> 2.02805  1.00000  -0.00010  1.00000
>>>>>>>>> 90           4         32.0      59.00   28.00   21.00           
>>>>>>>>> 2.02245  1.00000  -0.00010  1.00000
>>>>>>>>> 91          11         88.0      43.00   18.00   63.00           
>>>>>>>>> 2.01764  1.00000  -0.00010  1.00000
>>>>>>>>> 92           5         40.0      14.00   41.00   87.00           
>>>>>>>>> 2.01255  1.00000  -0.00010  1.00000
>>>>>>>>> 93           3         24.0      28.00   50.00   55.00           
>>>>>>>>> 2.01226  1.00000  -0.00010  1.00000
>>>>>>>>> 94           6         48.0      35.00    0.00   43.00           
>>>>>>>>> 1.99869  1.00000  -0.00010  1.00000
>>>>>>>>> 95           1          8.0      59.00   57.00   79.00           
>>>>>>>>> 1.99505  1.00000  -0.00010  1.00000
>>>>>>>>> 96           1          8.0      25.00    2.00   51.00           
>>>>>>>>> 1.99394  1.00000  -0.00010  1.00000
>>>>>>>>> 97           4         32.0      55.00    4.00   36.00           
>>>>>>>>> 1.98505  1.00000  -0.00010  1.00000
>>>>>>>>> 98           2         16.0      66.00   21.00    6.00           
>>>>>>>>> 1.97461  1.00000  -0.00010  1.00000
>>>>>>>>> 99           3         24.0      31.00   51.00   90.00           
>>>>>>>>> 1.97154  1.00000  -0.00010  1.00000
>>>>>>>>> 100           3         24.0      12.00   11.00   23.00           
>>>>>>>>> 1.95664  1.00000  -0.00010  1.00000
>>>>>>>>> 101           5         40.0      38.00   43.00   50.00           
>>>>>>>>> 1.95222  1.00000  -0.00010  1.00000
>>>>>>>>> 102           2         16.0      28.00   22.00    7.00           
>>>>>>>>> 1.95066  1.00000  -0.00010  1.00000
>>>>>>>>> 103           4         32.0      20.00   17.00   69.00           
>>>>>>>>> 1.94669  1.00000  -0.00010  1.00000
>>>>>>>>> 104           5         40.0       1.00    8.00   46.00           
>>>>>>>>> 1.94587  1.00000  -0.00010  1.00000
>>>>>>>>> 105           4         32.0      42.00   15.00   49.00           
>>>>>>>>> 1.94354  1.00000  -0.00010  1.00000
>>>>>>>>> 106           4         32.0       4.00   41.00   54.00           
>>>>>>>>> 1.93906  1.00000  -0.00010  1.00000
>>>>>>>>> 107           3         24.0      15.00    9.00   33.00           
>>>>>>>>> 1.93848  1.00000  -0.00010  1.00000
>>>>>>>>> 108           6         48.0      61.00   28.00   72.00           
>>>>>>>>> 1.92516  1.00000  -0.00010  1.00000
>>>>>>>>> 109           1          8.0      49.00   26.00   88.00           
>>>>>>>>> 1.92457  1.00000  -0.00010  1.00000
>>>>>>>>> 110           3         24.0      65.00   37.00   41.00           
>>>>>>>>> 1.92365  1.00000  -0.00010  1.00000
>>>>>>>>> 111           3         24.0      69.00   29.00   25.00           
>>>>>>>>> 1.91576  1.00000  -0.00010  1.00000
>>>>>>>>> 112           2         16.0      70.00   15.00    9.00           
>>>>>>>>> 1.89931  1.00000  -0.00010  1.00000
>>>>>>>>> 113           2         16.0      65.00   24.00   70.00           
>>>>>>>>> 1.89719  1.00000  -0.00010  1.00000
>>>>>>>>> 114           1          8.0      41.00   24.00   36.00           
>>>>>>>>> 1.89653  1.00000  -0.00010  1.00000
>>>>>>>>> 115           7         56.0      71.00   32.00   91.00           
>>>>>>>>> 1.89529  1.00000  -0.00010  1.00000
>>>>>>>>> 116           6         48.0      24.00   38.00   69.00           
>>>>>>>>> 1.88993  1.00000  -0.00010  1.00000
>>>>>>>>> 117           4         32.0       6.00   22.00   34.00           
>>>>>>>>> 1.88833  1.00000  -0.00010  1.00000
>>>>>>>>> 118           3         24.0      41.00   45.00   51.00           
>>>>>>>>> 1.87881  1.00000  -0.00010  1.00000
>>>>>>>>> 119           2         16.0      18.00   58.00   91.00           
>>>>>>>>> 1.87841  1.00000  -0.00010  1.00000
>>>>>>>>> 120           3         24.0      44.00   10.00   17.00           
>>>>>>>>> 1.87792  1.00000  -0.00010  1.00000
>>>>>>>>> 121           4         32.0       7.00   38.00   71.00           
>>>>>>>>> 1.87444  1.00000  -0.00010  1.00000
>>>>>>>>> 122           2         16.0      39.00   12.00   65.00           
>>>>>>>>> 1.87242  1.00000  -0.00010  1.00000
>>>>>>>>> 123           7         56.0      25.00   35.00   38.00           
>>>>>>>>> 1.87054  1.00000  -0.00010  1.00000
>>>>>>>>> 124           3         24.0      14.00   28.00   25.00           
>>>>>>>>> 1.86776  1.00000  -0.00010  1.00000
>>>>>>>>> 125           4         32.0      64.00   23.00   76.00           
>>>>>>>>> 1.86629  1.00000  -0.00010  1.00000
>>>>>>>>> 126           7         56.0      58.00   44.00   43.00           
>>>>>>>>> 1.86598  1.00000  -0.00010  1.00000
>>>>>>>>> 127           1          8.0      40.00   44.00   63.00           
>>>>>>>>> 1.86487  1.00000  -0.00010  1.00000
>>>>>>>>> 128           1          8.0      19.00    8.00   55.00           
>>>>>>>>> 1.84677  1.00000  -0.00010  1.00000
>>>>>>>>> 129           1          8.0      59.00   58.00   80.00           
>>>>>>>>> 1.84162  1.00000  -0.00010  1.00000
>>>>>>>>> 130           1          8.0      16.00   40.00   92.00           
>>>>>>>>> 1.83828  1.00000  -0.00010  1.00000
>>>>>>>>> 131           2         16.0      21.00   42.00   63.00           
>>>>>>>>> 1.83258  1.00000  -0.00010  1.00000
>>>>>>>>> 132           6         48.0       2.00   19.00   69.00           
>>>>>>>>> 1.82733  1.00000  -0.00010  1.00000
>>>>>>>>> 133           1          8.0      25.00   45.00   73.00           
>>>>>>>>> 1.81604  1.00000  -0.00010  1.00000
>>>>>>>>> 134           1          8.0       6.00   10.00   48.00           
>>>>>>>>> 1.81496  1.00000  -0.00010  1.00000
>>>>>>>>> 135           2         16.0       9.00    7.00   43.00           
>>>>>>>>> 1.80712  1.00000  -0.00010  1.00000
>>>>>>>>> 136           1          8.0      36.00    2.00   53.00           
>>>>>>>>> 1.80667  1.00000  -0.00010  1.00000
>>>>>>>>> 137           1          8.0      19.00   43.00   60.00           
>>>>>>>>> 1.80358  1.00000  -0.00010  1.00000
>>>>>>>>> 138           1          8.0      24.00    0.00   25.00           
>>>>>>>>> 1.80337  1.00000  -0.00010  1.00000
>>>>>>>>> 139           2         16.0      25.00    5.00   42.00           
>>>>>>>>> 1.79990  1.00000  -0.00010  1.00000
>>>>>>>>> 140           4         32.0      69.00   18.00   40.00           
>>>>>>>>> 1.79854  1.00000  -0.00010  1.00000
>>>>>>>>> 141           1          8.0      62.00   48.00   85.00           
>>>>>>>>> 1.79309  1.00000  -0.00010  1.00000
>>>>>>>>> 142           4         32.0      61.00   43.00   84.00           
>>>>>>>>> 1.78916  1.00000  -0.00010  1.00000
>>>>>>>>> 143           1          8.0      13.00   13.00   34.00           
>>>>>>>>> 1.78877  1.00000  -0.00010  1.00000
>>>>>>>>> 144           1          8.0      34.00   28.00   78.00           
>>>>>>>>> 1.78826  1.00000  -0.00010  1.00000
>>>>>>>>> 145           3         24.0      69.00   32.00   83.00           
>>>>>>>>> 1.78152  1.00000  -0.00010  1.00000
>>>>>>>>> 146           1          8.0      14.00   11.00   33.00           
>>>>>>>>> 1.78004  1.00000  -0.00010  1.00000
>>>>>>>>> 147           1          8.0      70.00   19.00   25.00           
>>>>>>>>> 1.77961  1.00000  -0.00010  1.00000
>>>>>>>>> 148           1          8.0      24.00    1.00   50.00           
>>>>>>>>> 1.77625  1.00000  -0.00010  1.00000
>>>>>>>>> 149           1          8.0       3.00   35.00   84.00           
>>>>>>>>> 1.77073  1.00000  -0.00010  1.00000
>>>>>>>>> 150           1          8.0      22.00   43.00   64.00           
>>>>>>>>> 1.77048  1.00000  -0.00010  1.00000
>>>>>>>>> 151           1          8.0      25.00   63.00   83.00           
>>>>>>>>> 1.76957  1.00000  -0.00010  1.00000
>>>>>>>>> 152           1          8.0      52.00   57.00   72.00           
>>>>>>>>> 1.76913  1.00000  -0.00010  1.00000
>>>>>>>>> 153           1          8.0       6.00   24.00   31.00           
>>>>>>>>> 1.76905  1.00000  -0.00010  1.00000
>>>>>>>>> 154           1          8.0       7.00   37.00   72.00           
>>>>>>>>> 1.76885  1.00000  -0.00010  1.00000
>>>>>>>>> 155           2         16.0      75.00   24.00   12.00           
>>>>>>>>> 1.76788  1.00000  -0.00010  1.00000
>>>>>>>>> 156           1          8.0      64.00   38.00   42.00           
>>>>>>>>> 1.76533  1.00000  -0.00010  1.00000
>>>>>>>>> 157           1          8.0      54.00   32.00   84.00           
>>>>>>>>> 1.76446  1.00000  -0.00010  1.00000
>>>>>>>>> 158           1          8.0      23.00   38.00   88.00           
>>>>>>>>> 1.76098  1.00000  -0.00010  1.00000
>>>>>>>>> 159           1          8.0       6.00   40.00   33.00           
>>>>>>>>> 1.75765  1.00000  -0.00010  1.00000
>>>>>>>>> 160           1          8.0      22.00   25.00    9.00           
>>>>>>>>> 1.75009  1.00000  -0.00010  1.00000
>>>>>>>>> 161           2         16.0      67.00    3.00   52.00           
>>>>>>>>> 1.74760  1.00000  -0.00010  1.00000
>>>>>>>>> 162           2         16.0      28.00   67.00   70.00           
>>>>>>>>> 1.74531  1.00000  -0.00010  1.00000
>>>>>>>>> 163           1          8.0       4.00   33.00   30.00           
>>>>>>>>> 1.74303  1.00000  -0.00010  1.00000
>>>>>>>>> 164           1          8.0      69.00   20.00   74.00           
>>>>>>>>> 1.74160  1.00000  -0.00010  1.00000
>>>>>>>>> 165           1          8.0      18.00   21.00   55.00           
>>>>>>>>> 1.74153  1.00000  -0.00010  1.00000
>>>>>>>>> 166           2         16.0      31.00   25.00   80.00           
>>>>>>>>> 1.73939  1.00000  -0.00010  1.00000
>>>>>>>>> 167           2         16.0      22.00   40.00   63.00           
>>>>>>>>> 1.73425  1.00000  -0.00010  1.00000
>>>>>>>>> 168           2         16.0      68.00   21.00   74.00           
>>>>>>>>> 1.72982  1.00000  -0.00010  1.00000
>>>>>>>>> 169           2         16.0       7.00   18.00   27.00           
>>>>>>>>> 1.72964  1.00000  -0.00010  1.00000
>>>>>>>>> 170           1          8.0      11.00   29.00   60.00           
>>>>>>>>> 1.72963  1.00000  -0.00010  1.00000
>>>>>>>>> 171           1          8.0      25.00   65.00   86.00           
>>>>>>>>> 1.72933  1.00000  -0.00010  1.00000
>>>>>>>>> 172           1          8.0      40.00   10.00   56.00           
>>>>>>>>> 1.72897  1.00000  -0.00010  1.00000
>>>>>>>>> 173           2         16.0      40.00   56.00   61.00           
>>>>>>>>> 1.72244  1.00000  -0.00010  1.00000
>>>>>>>>> 174           1          8.0      17.00   67.00   74.00           
>>>>>>>>> 1.72103  1.00000  -0.00010  1.00000
>>>>>>>>> 175           1          8.0      42.00   67.00   70.00           
>>>>>>>>> 1.71913  1.00000  -0.00010  1.00000
>>>>>>>>> 176           1          8.0      25.00   64.00   85.00           
>>>>>>>>> 1.71646  1.00000  -0.00010  1.00000
>>>>>>>>> 177           1          8.0       9.00   38.00   73.00           
>>>>>>>>> 1.71532  1.00000  -0.00010  1.00000
>>>>>>>>> 178           1          8.0       4.00   34.00   31.00           
>>>>>>>>> 1.71458  1.00000  -0.00010  1.00000
>>>>>>>>> 179           1          8.0       3.00   22.00    7.00           
>>>>>>>>> 1.71416  1.00000  -0.00010  1.00000
>>>>>>>>> 180           1          8.0      31.00   50.00   89.00           
>>>>>>>>> 1.71002  1.00000  -0.00010  1.00000
>>>>>>>>> 181           1          8.0      51.00    7.00   19.00           
>>>>>>>>> 1.70870  1.00000  -0.00010  1.00000
>>>>>>>>> 182           1          8.0      43.00    1.00   48.00           
>>>>>>>>> 1.70621  1.00000  -0.00010  1.00000
>>>>>>>>> 183           1          8.0      22.00   36.00   41.00           
>>>>>>>>> 1.70538  1.00000  -0.00010  1.00000
>>>>>>>>> 184           1          8.0       1.00   22.00   71.00           
>>>>>>>>> 1.70431  1.00000  -0.00010  1.00000
>>>>>>>>> 185           1          8.0      65.00   20.00    5.00           
>>>>>>>>> 1.70426  1.00000  -0.00010  1.00000
>>>>>>>>> 186           1          8.0      70.00   10.00   43.00           
>>>>>>>>> 1.70299  1.00000  -0.00010  1.00000
>>>>>>>>> 187           1          8.0      11.00   17.00   62.00           
>>>>>>>>> 1.70210  1.00000  -0.00010  1.00000
>>>>>>>>> 188           1          8.0       1.00   21.00   70.00           
>>>>>>>>> 1.70207  1.00000  -0.00010  1.00000
>>>>>>>>> 189           1          8.0      35.00   26.00   63.00           
>>>>>>>>> 1.70166  1.00000  -0.00010  1.00000
>>>>>>>>> 190           1          8.0      11.00   37.00   66.00           
>>>>>>>>> 1.70059  1.00000  -0.00010  1.00000
>>>>>>>>> 191           1          8.0      22.00   37.00   70.00           
>>>>>>>>> 1.70035  1.00000  -0.00010  1.00000
>>>>>>>>> 192           1          8.0      25.00   14.00   22.00           
>>>>>>>>> 1.69897  1.00000  -0.00010  1.00000
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Date: Tue, 25 Jun 2013 12:22:23 -0400
>>>>>>>>> From: Douglas N Greve <gr...@nmr.mgh.harvard.edu
>>>>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>>
>>>>>>>>> Subject: Re: [Freesurfer] Monte Carlo simulation: Talairach
>>>>>>>>> coordinates
>>>>>>>>> To: freesurfer@nmr.mgh.harvard.edu
>>>>>>>>> <mailto:freesurfer@nmr.mgh.harvard.edu>
>>>>>>>>> Message-ID: <51c9c3bf.7000...@nmr.mgh.harvard.edu
>>>>>>>>> <mailto:51c9c3bf.7000...@nmr.mgh.harvard.edu>>
>>>>>>>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>>>>>>>>>
>>>>>>>>> can you send the file?
>>>>>>>>>
>>>>>>>>> On 06/25/2013 10:08 AM, Emily Boeke wrote:
>>>>>>>>>> Hi All,
>>>>>>>>>>
>>>>>>>>>> I'm running Monte Carlo simulations on functional data, and the
>>>>>>>>>> coordinate information outputted in the cluster.summary file isn't
>>>>>>>>>> making sense. Usually the coordinates for the clusters listed are
>>>>>>>>>> Talairach coordinates, but in the .summary files I'm getting, the
>>>>>>>>>> coordinates are labeled "VoxX VoxY VoxZ" instead of "TalX TalY TalZ"
>>>>>>>>>> and the numbers are clearly not Talairach coordinates. Above the
>>>>>>>>>> table, it says "Reporting Coordinates in Voxel Indices." I also
>>>>>>>>>> noted that in the descriptive information above the table, it says
>>>>>>>>>> "Registration: None: Tal Coords invalid."
>>>>>>>>>>
>>>>>>>>>> However, the .nii files I'm seeing look like I would expect them too.
>>>>>>>>>>
>>>>>>>>>> I'm using the same command line I've run before, so I have no idea
>>>>>>>>>> why the .summary file looks different. Does anyone know why this
>>>>>>>>>> would be?
>>>>>>>>>>
>>>>>>>>>> Thanks,
>>>>>>>>>> Emily
>>>>>>>> _______________________________________________
>>>>>>>> Freesurfer mailing list
>>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>> -- 
>>>>>>> Douglas N. Greve, Ph.D.
>>>>>>> MGH-NMR Center
>>>>>>> gr...@nmr.mgh.harvard.edu
>>>>>>> Phone Number: 617-724-2358
>>>>>>> Fax: 617-726-7422
>>>>>>>
>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Freesurfer mailing list
>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>>
>>>>>>>
>>>>>> _______________________________________________
>>>>>> Freesurfer mailing list
>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>
>>>>>>
>>>> -- 
>>>> Douglas N. Greve, Ph.D.
>>>> MGH-NMR Center
>>>> gr...@nmr.mgh.harvard.edu
>>>> Phone Number: 617-724-2358
>>>> Fax: 617-726-7422
>>>>
>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>>
>>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>> -- 
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> gr...@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>
>

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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