This was the command I ran: mri_glmfit-sim --glmdir tal.sm.wls.pct.rfx --sim mc-z 10000 2 HvL.SBQ.2.10000.pos --stim-sign pos
On Jun 28, 2013, at 3:29 PM, Douglas N Greve wrote: > Hi Emily, what is your mri_glmfit-sim command line? > doug > > > On 06/28/2013 02:40 PM, Emily Boeke wrote: >> Any thoughts on why this file turned out this way? >> >> Thanks! >> Emily >> >> On Jun 26, 2013, at 8:09 AM, Emily Boeke wrote: >> >>> Sure, here it is: >>> >>> # Cluster Growing Summary (mri_volcluster) >>> # $Id: mri_volcluster.c,v 1.38.2.3 2009/01/16 02:26:36 greve Exp $ >>> # cwd >>> /autofs/cluster/maury/users/gcoombs/College_Risk/ObjectLooming/allSBQ_061213/st4-obj_ns-4runs/face_v_car >>> # cmdline mri_volcluster --in tal.sm.wls.pct.rfx//group/sig.mgh --csd >>> tal.sm.wls.pct.rfx//csd/HvL.SBQ.2.pos.j001-group.csd --mask >>> tal.sm.wls.pct.rfx//mask.mgh --cwsig >>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.mgh --vwsig >>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.voxel.mgh --sum >>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.summary --ocn >>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.ocn.mgh --csdpdf >>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.pdf.dat >>> # sysname Linux >>> # hostname compute-0-114 >>> # machine x86_64 >>> # user eboeke01 >>> # Input Volume: tal.sm.wls.pct.rfx//group/sig.mgh >>> # Frame Number: 0 >>> # Minimum Threshold: 2 >>> # Maximum Threshold: inifinity >>> # Threshold Sign: pos >>> # AdjustThreshWhenOneTail 1 >>> # Size Threshold: 0 mm^3 >>> # Size Threshold: 0 voxels >>> # Voxel Size: 8 mm^3 >>> # Registration: None : Tal Coords invalid >>> # Mask Vol: tal.sm.wls.pct.rfx//mask.mgh >>> # Mask Thresh: 0.500000 >>> # Mask Sign: abs >>> # Mask Invert: 0 >>> # AllowDiag: 0 >>> # NClusters 192 >>> # CSD thresh 2.000000 >>> # CSD nreps 10000 >>> # CSD simtype mc-z >>> # CSD contrast group >>> # CSD confint 90.000000 >>> # >>> # Reporting Coordinates in Voxel Indices >>> # Cluster Size(n) Size(mm^3) VoxX VoxY VoxZ >>> Max# CWP CWPLow CWPHi >>> 1 597 4776.0 30.00 50.00 65.00 5.94673 >>> 0.02490 0.02290 0.02690 >>> 2 730 5840.0 27.00 28.00 86.00 5.56628 >>> 0.00720 0.00610 0.00830 >>> 3 1124 8992.0 5.00 18.00 38.00 5.01850 >>> 0.00010 0.00000 0.00020 >>> 4 259 2072.0 59.00 20.00 78.00 5.01465 >>> 0.68360 0.67760 0.68960 >>> 5 279 2232.0 18.00 22.00 73.00 3.94952 >>> 0.58840 0.58210 0.59470 >>> 6 194 1552.0 35.00 66.00 76.00 3.94297 >>> 0.93630 0.93320 0.93940 >>> 7 664 5312.0 32.00 15.00 60.00 3.68551 >>> 0.01400 0.01250 0.01550 >>> 8 293 2344.0 28.00 5.00 58.00 3.66686 >>> 0.52560 0.51920 0.53200 >>> 9 49 392.0 12.00 52.00 58.00 3.63351 >>> 1.00000 -0.00010 1.00000 >>> 10 150 1200.0 5.00 4.00 28.00 3.62637 >>> 0.99560 0.99470 0.99640 >>> 11 298 2384.0 12.00 47.00 86.00 3.58250 >>> 0.50260 0.49620 0.50900 >>> 12 343 2744.0 13.00 39.00 60.00 3.57829 >>> 0.33900 0.33290 0.34510 >>> 13 467 3736.0 21.00 42.00 49.00 3.53307 >>> 0.09590 0.09210 0.09970 >>> 14 276 2208.0 49.00 36.00 56.00 3.51549 >>> 0.60280 0.59650 0.60910 >>> 15 134 1072.0 70.00 17.00 34.00 3.38623 >>> 0.99890 0.99850 0.99930 >>> 16 75 600.0 5.00 25.00 55.00 3.09334 >>> 1.00000 -0.00010 1.00000 >>> 17 74 592.0 13.00 10.00 49.00 3.03017 >>> 1.00000 -0.00010 1.00000 >>> 18 45 360.0 65.00 39.00 62.00 3.00205 >>> 1.00000 -0.00010 1.00000 >>> 19 15 120.0 72.00 7.00 42.00 2.96283 >>> 1.00000 -0.00010 1.00000 >>> 20 55 440.0 62.00 9.00 23.00 2.93121 >>> 1.00000 -0.00010 1.00000 >>> 21 79 632.0 46.00 60.00 87.00 2.92199 >>> 1.00000 -0.00010 1.00000 >>> 22 35 280.0 2.00 41.00 48.00 2.84065 >>> 1.00000 -0.00010 1.00000 >>> 23 44 352.0 6.00 35.00 27.00 2.80109 >>> 1.00000 -0.00010 1.00000 >>> 24 14 112.0 50.00 3.00 54.00 2.75399 >>> 1.00000 -0.00010 1.00000 >>> 25 71 568.0 0.00 22.00 9.00 2.75160 >>> 1.00000 -0.00010 1.00000 >>> 26 5 40.0 28.00 0.00 36.00 2.72535 >>> 1.00000 -0.00010 1.00000 >>> 27 130 1040.0 40.00 1.00 45.00 2.71826 >>> 0.99920 0.99880 0.99950 >>> 28 81 648.0 33.00 61.00 86.00 2.70040 >>> 1.00000 -0.00010 1.00000 >>> 29 73 584.0 67.00 26.00 52.00 2.68744 >>> 1.00000 -0.00010 1.00000 >>> 30 16 128.0 64.00 48.00 72.00 2.67636 >>> 1.00000 -0.00010 1.00000 >>> 31 28 224.0 75.00 35.00 88.00 2.65193 >>> 1.00000 -0.00010 1.00000 >>> 32 11 88.0 15.00 21.00 82.00 2.61771 >>> 1.00000 -0.00010 1.00000 >>> 33 5 40.0 45.00 0.00 27.00 2.61424 >>> 1.00000 -0.00010 1.00000 >>> 34 16 128.0 9.00 13.00 70.00 2.58842 >>> 1.00000 -0.00010 1.00000 >>> 35 23 184.0 15.00 27.00 48.00 2.57410 >>> 1.00000 -0.00010 1.00000 >>> 36 28 224.0 15.00 31.00 44.00 2.57219 >>> 1.00000 -0.00010 1.00000 >>> 37 23 184.0 29.00 56.00 78.00 2.55890 >>> 1.00000 -0.00010 1.00000 >>> 38 7 56.0 0.00 42.00 92.00 2.55525 >>> 1.00000 -0.00010 1.00000 >>> 39 49 392.0 52.00 40.00 88.00 2.54894 >>> 1.00000 -0.00010 1.00000 >>> 40 42 336.0 7.00 31.00 63.00 2.52160 >>> 1.00000 -0.00010 1.00000 >>> 41 37 296.0 22.00 43.00 81.00 2.50557 >>> 1.00000 -0.00010 1.00000 >>> 42 21 168.0 22.00 58.00 72.00 2.49912 >>> 1.00000 -0.00010 1.00000 >>> 43 32 256.0 59.00 45.00 91.00 2.44918 >>> 1.00000 -0.00010 1.00000 >>> 44 12 96.0 31.00 29.00 36.00 2.42939 >>> 1.00000 -0.00010 1.00000 >>> 45 50 400.0 14.00 34.00 26.00 2.42102 >>> 1.00000 -0.00010 1.00000 >>> 46 22 176.0 6.00 15.00 55.00 2.41349 >>> 1.00000 -0.00010 1.00000 >>> 47 12 96.0 9.00 43.00 42.00 2.40593 >>> 1.00000 -0.00010 1.00000 >>> 48 27 216.0 64.00 17.00 31.00 2.38351 >>> 1.00000 -0.00010 1.00000 >>> 49 16 128.0 25.00 49.00 81.00 2.37500 >>> 1.00000 -0.00010 1.00000 >>> 50 37 296.0 12.00 18.00 54.00 2.36836 >>> 1.00000 -0.00010 1.00000 >>> 51 22 176.0 43.00 50.00 63.00 2.35072 >>> 1.00000 -0.00010 1.00000 >>> 52 39 312.0 31.00 39.00 46.00 2.31633 >>> 1.00000 -0.00010 1.00000 >>> 53 7 56.0 75.00 60.00 84.00 2.28945 >>> 1.00000 -0.00010 1.00000 >>> 54 6 48.0 33.00 25.00 67.00 2.28154 >>> 1.00000 -0.00010 1.00000 >>> 55 10 80.0 49.00 40.00 33.00 2.27301 >>> 1.00000 -0.00010 1.00000 >>> 56 13 104.0 26.00 65.00 88.00 2.27017 >>> 1.00000 -0.00010 1.00000 >>> 57 6 48.0 13.00 25.00 26.00 2.26583 >>> 1.00000 -0.00010 1.00000 >>> 58 15 120.0 54.00 9.00 20.00 2.25868 >>> 1.00000 -0.00010 1.00000 >>> 59 16 128.0 63.00 14.00 19.00 2.21490 >>> 1.00000 -0.00010 1.00000 >>> 60 4 32.0 9.00 25.00 61.00 2.21056 >>> 1.00000 -0.00010 1.00000 >>> 61 37 296.0 25.00 37.00 62.00 2.21055 >>> 1.00000 -0.00010 1.00000 >>> 62 10 80.0 59.00 51.00 51.00 2.20982 >>> 1.00000 -0.00010 1.00000 >>> 63 20 160.0 66.00 41.00 51.00 2.19863 >>> 1.00000 -0.00010 1.00000 >>> 64 2 16.0 53.00 66.00 72.00 2.18410 >>> 1.00000 -0.00010 1.00000 >>> 65 9 72.0 37.00 38.00 66.00 2.17739 >>> 1.00000 -0.00010 1.00000 >>> 66 6 48.0 6.00 44.00 62.00 2.17461 >>> 1.00000 -0.00010 1.00000 >>> 67 39 312.0 50.00 35.00 70.00 2.16322 >>> 1.00000 -0.00010 1.00000 >>> 68 11 88.0 52.00 6.00 21.00 2.16002 >>> 1.00000 -0.00010 1.00000 >>> 69 6 48.0 26.00 0.00 43.00 2.15030 >>> 1.00000 -0.00010 1.00000 >>> 70 8 64.0 41.00 16.00 19.00 2.14875 >>> 1.00000 -0.00010 1.00000 >>> 71 4 32.0 51.00 8.00 39.00 2.14592 >>> 1.00000 -0.00010 1.00000 >>> 72 3 24.0 47.00 9.00 21.00 2.14285 >>> 1.00000 -0.00010 1.00000 >>> 73 8 64.0 67.00 19.00 27.00 2.14034 >>> 1.00000 -0.00010 1.00000 >>> 74 12 96.0 3.00 59.00 86.00 2.13879 >>> 1.00000 -0.00010 1.00000 >>> 75 3 24.0 15.00 6.00 19.00 2.13024 >>> 1.00000 -0.00010 1.00000 >>> 76 9 72.0 59.00 41.00 41.00 2.12204 >>> 1.00000 -0.00010 1.00000 >>> 77 18 144.0 35.00 48.00 55.00 2.10334 >>> 1.00000 -0.00010 1.00000 >>> 78 6 48.0 40.00 57.00 92.00 2.08841 >>> 1.00000 -0.00010 1.00000 >>> 79 7 56.0 43.00 1.00 17.00 2.07371 >>> 1.00000 -0.00010 1.00000 >>> 80 6 48.0 41.00 55.00 69.00 2.07007 >>> 1.00000 -0.00010 1.00000 >>> 81 14 112.0 23.00 35.00 88.00 2.06307 >>> 1.00000 -0.00010 1.00000 >>> 82 11 88.0 40.00 73.00 82.00 2.05213 >>> 1.00000 -0.00010 1.00000 >>> 83 5 40.0 39.00 19.00 51.00 2.04809 >>> 1.00000 -0.00010 1.00000 >>> 84 10 80.0 38.00 24.00 69.00 2.04252 >>> 1.00000 -0.00010 1.00000 >>> 85 9 72.0 30.00 32.00 67.00 2.04237 >>> 1.00000 -0.00010 1.00000 >>> 86 7 56.0 54.00 58.00 72.00 2.03645 >>> 1.00000 -0.00010 1.00000 >>> 87 10 80.0 30.00 13.00 22.00 2.03577 >>> 1.00000 -0.00010 1.00000 >>> 88 8 64.0 0.00 25.00 72.00 2.03193 >>> 1.00000 -0.00010 1.00000 >>> 89 5 40.0 7.00 23.00 6.00 2.02805 >>> 1.00000 -0.00010 1.00000 >>> 90 4 32.0 59.00 28.00 21.00 2.02245 >>> 1.00000 -0.00010 1.00000 >>> 91 11 88.0 43.00 18.00 63.00 2.01764 >>> 1.00000 -0.00010 1.00000 >>> 92 5 40.0 14.00 41.00 87.00 2.01255 >>> 1.00000 -0.00010 1.00000 >>> 93 3 24.0 28.00 50.00 55.00 2.01226 >>> 1.00000 -0.00010 1.00000 >>> 94 6 48.0 35.00 0.00 43.00 1.99869 >>> 1.00000 -0.00010 1.00000 >>> 95 1 8.0 59.00 57.00 79.00 1.99505 >>> 1.00000 -0.00010 1.00000 >>> 96 1 8.0 25.00 2.00 51.00 1.99394 >>> 1.00000 -0.00010 1.00000 >>> 97 4 32.0 55.00 4.00 36.00 1.98505 >>> 1.00000 -0.00010 1.00000 >>> 98 2 16.0 66.00 21.00 6.00 1.97461 >>> 1.00000 -0.00010 1.00000 >>> 99 3 24.0 31.00 51.00 90.00 1.97154 >>> 1.00000 -0.00010 1.00000 >>> 100 3 24.0 12.00 11.00 23.00 1.95664 >>> 1.00000 -0.00010 1.00000 >>> 101 5 40.0 38.00 43.00 50.00 1.95222 >>> 1.00000 -0.00010 1.00000 >>> 102 2 16.0 28.00 22.00 7.00 1.95066 >>> 1.00000 -0.00010 1.00000 >>> 103 4 32.0 20.00 17.00 69.00 1.94669 >>> 1.00000 -0.00010 1.00000 >>> 104 5 40.0 1.00 8.00 46.00 1.94587 >>> 1.00000 -0.00010 1.00000 >>> 105 4 32.0 42.00 15.00 49.00 1.94354 >>> 1.00000 -0.00010 1.00000 >>> 106 4 32.0 4.00 41.00 54.00 1.93906 >>> 1.00000 -0.00010 1.00000 >>> 107 3 24.0 15.00 9.00 33.00 1.93848 >>> 1.00000 -0.00010 1.00000 >>> 108 6 48.0 61.00 28.00 72.00 1.92516 >>> 1.00000 -0.00010 1.00000 >>> 109 1 8.0 49.00 26.00 88.00 1.92457 >>> 1.00000 -0.00010 1.00000 >>> 110 3 24.0 65.00 37.00 41.00 1.92365 >>> 1.00000 -0.00010 1.00000 >>> 111 3 24.0 69.00 29.00 25.00 1.91576 >>> 1.00000 -0.00010 1.00000 >>> 112 2 16.0 70.00 15.00 9.00 1.89931 >>> 1.00000 -0.00010 1.00000 >>> 113 2 16.0 65.00 24.00 70.00 1.89719 >>> 1.00000 -0.00010 1.00000 >>> 114 1 8.0 41.00 24.00 36.00 1.89653 >>> 1.00000 -0.00010 1.00000 >>> 115 7 56.0 71.00 32.00 91.00 1.89529 >>> 1.00000 -0.00010 1.00000 >>> 116 6 48.0 24.00 38.00 69.00 1.88993 >>> 1.00000 -0.00010 1.00000 >>> 117 4 32.0 6.00 22.00 34.00 1.88833 >>> 1.00000 -0.00010 1.00000 >>> 118 3 24.0 41.00 45.00 51.00 1.87881 >>> 1.00000 -0.00010 1.00000 >>> 119 2 16.0 18.00 58.00 91.00 1.87841 >>> 1.00000 -0.00010 1.00000 >>> 120 3 24.0 44.00 10.00 17.00 1.87792 >>> 1.00000 -0.00010 1.00000 >>> 121 4 32.0 7.00 38.00 71.00 1.87444 >>> 1.00000 -0.00010 1.00000 >>> 122 2 16.0 39.00 12.00 65.00 1.87242 >>> 1.00000 -0.00010 1.00000 >>> 123 7 56.0 25.00 35.00 38.00 1.87054 >>> 1.00000 -0.00010 1.00000 >>> 124 3 24.0 14.00 28.00 25.00 1.86776 >>> 1.00000 -0.00010 1.00000 >>> 125 4 32.0 64.00 23.00 76.00 1.86629 >>> 1.00000 -0.00010 1.00000 >>> 126 7 56.0 58.00 44.00 43.00 1.86598 >>> 1.00000 -0.00010 1.00000 >>> 127 1 8.0 40.00 44.00 63.00 1.86487 >>> 1.00000 -0.00010 1.00000 >>> 128 1 8.0 19.00 8.00 55.00 1.84677 >>> 1.00000 -0.00010 1.00000 >>> 129 1 8.0 59.00 58.00 80.00 1.84162 >>> 1.00000 -0.00010 1.00000 >>> 130 1 8.0 16.00 40.00 92.00 1.83828 >>> 1.00000 -0.00010 1.00000 >>> 131 2 16.0 21.00 42.00 63.00 1.83258 >>> 1.00000 -0.00010 1.00000 >>> 132 6 48.0 2.00 19.00 69.00 1.82733 >>> 1.00000 -0.00010 1.00000 >>> 133 1 8.0 25.00 45.00 73.00 1.81604 >>> 1.00000 -0.00010 1.00000 >>> 134 1 8.0 6.00 10.00 48.00 1.81496 >>> 1.00000 -0.00010 1.00000 >>> 135 2 16.0 9.00 7.00 43.00 1.80712 >>> 1.00000 -0.00010 1.00000 >>> 136 1 8.0 36.00 2.00 53.00 1.80667 >>> 1.00000 -0.00010 1.00000 >>> 137 1 8.0 19.00 43.00 60.00 1.80358 >>> 1.00000 -0.00010 1.00000 >>> 138 1 8.0 24.00 0.00 25.00 1.80337 >>> 1.00000 -0.00010 1.00000 >>> 139 2 16.0 25.00 5.00 42.00 1.79990 >>> 1.00000 -0.00010 1.00000 >>> 140 4 32.0 69.00 18.00 40.00 1.79854 >>> 1.00000 -0.00010 1.00000 >>> 141 1 8.0 62.00 48.00 85.00 1.79309 >>> 1.00000 -0.00010 1.00000 >>> 142 4 32.0 61.00 43.00 84.00 1.78916 >>> 1.00000 -0.00010 1.00000 >>> 143 1 8.0 13.00 13.00 34.00 1.78877 >>> 1.00000 -0.00010 1.00000 >>> 144 1 8.0 34.00 28.00 78.00 1.78826 >>> 1.00000 -0.00010 1.00000 >>> 145 3 24.0 69.00 32.00 83.00 1.78152 >>> 1.00000 -0.00010 1.00000 >>> 146 1 8.0 14.00 11.00 33.00 1.78004 >>> 1.00000 -0.00010 1.00000 >>> 147 1 8.0 70.00 19.00 25.00 1.77961 >>> 1.00000 -0.00010 1.00000 >>> 148 1 8.0 24.00 1.00 50.00 1.77625 >>> 1.00000 -0.00010 1.00000 >>> 149 1 8.0 3.00 35.00 84.00 1.77073 >>> 1.00000 -0.00010 1.00000 >>> 150 1 8.0 22.00 43.00 64.00 1.77048 >>> 1.00000 -0.00010 1.00000 >>> 151 1 8.0 25.00 63.00 83.00 1.76957 >>> 1.00000 -0.00010 1.00000 >>> 152 1 8.0 52.00 57.00 72.00 1.76913 >>> 1.00000 -0.00010 1.00000 >>> 153 1 8.0 6.00 24.00 31.00 1.76905 >>> 1.00000 -0.00010 1.00000 >>> 154 1 8.0 7.00 37.00 72.00 1.76885 >>> 1.00000 -0.00010 1.00000 >>> 155 2 16.0 75.00 24.00 12.00 1.76788 >>> 1.00000 -0.00010 1.00000 >>> 156 1 8.0 64.00 38.00 42.00 1.76533 >>> 1.00000 -0.00010 1.00000 >>> 157 1 8.0 54.00 32.00 84.00 1.76446 >>> 1.00000 -0.00010 1.00000 >>> 158 1 8.0 23.00 38.00 88.00 1.76098 >>> 1.00000 -0.00010 1.00000 >>> 159 1 8.0 6.00 40.00 33.00 1.75765 >>> 1.00000 -0.00010 1.00000 >>> 160 1 8.0 22.00 25.00 9.00 1.75009 >>> 1.00000 -0.00010 1.00000 >>> 161 2 16.0 67.00 3.00 52.00 1.74760 >>> 1.00000 -0.00010 1.00000 >>> 162 2 16.0 28.00 67.00 70.00 1.74531 >>> 1.00000 -0.00010 1.00000 >>> 163 1 8.0 4.00 33.00 30.00 1.74303 >>> 1.00000 -0.00010 1.00000 >>> 164 1 8.0 69.00 20.00 74.00 1.74160 >>> 1.00000 -0.00010 1.00000 >>> 165 1 8.0 18.00 21.00 55.00 1.74153 >>> 1.00000 -0.00010 1.00000 >>> 166 2 16.0 31.00 25.00 80.00 1.73939 >>> 1.00000 -0.00010 1.00000 >>> 167 2 16.0 22.00 40.00 63.00 1.73425 >>> 1.00000 -0.00010 1.00000 >>> 168 2 16.0 68.00 21.00 74.00 1.72982 >>> 1.00000 -0.00010 1.00000 >>> 169 2 16.0 7.00 18.00 27.00 1.72964 >>> 1.00000 -0.00010 1.00000 >>> 170 1 8.0 11.00 29.00 60.00 1.72963 >>> 1.00000 -0.00010 1.00000 >>> 171 1 8.0 25.00 65.00 86.00 1.72933 >>> 1.00000 -0.00010 1.00000 >>> 172 1 8.0 40.00 10.00 56.00 1.72897 >>> 1.00000 -0.00010 1.00000 >>> 173 2 16.0 40.00 56.00 61.00 1.72244 >>> 1.00000 -0.00010 1.00000 >>> 174 1 8.0 17.00 67.00 74.00 1.72103 >>> 1.00000 -0.00010 1.00000 >>> 175 1 8.0 42.00 67.00 70.00 1.71913 >>> 1.00000 -0.00010 1.00000 >>> 176 1 8.0 25.00 64.00 85.00 1.71646 >>> 1.00000 -0.00010 1.00000 >>> 177 1 8.0 9.00 38.00 73.00 1.71532 >>> 1.00000 -0.00010 1.00000 >>> 178 1 8.0 4.00 34.00 31.00 1.71458 >>> 1.00000 -0.00010 1.00000 >>> 179 1 8.0 3.00 22.00 7.00 1.71416 >>> 1.00000 -0.00010 1.00000 >>> 180 1 8.0 31.00 50.00 89.00 1.71002 >>> 1.00000 -0.00010 1.00000 >>> 181 1 8.0 51.00 7.00 19.00 1.70870 >>> 1.00000 -0.00010 1.00000 >>> 182 1 8.0 43.00 1.00 48.00 1.70621 >>> 1.00000 -0.00010 1.00000 >>> 183 1 8.0 22.00 36.00 41.00 1.70538 >>> 1.00000 -0.00010 1.00000 >>> 184 1 8.0 1.00 22.00 71.00 1.70431 >>> 1.00000 -0.00010 1.00000 >>> 185 1 8.0 65.00 20.00 5.00 1.70426 >>> 1.00000 -0.00010 1.00000 >>> 186 1 8.0 70.00 10.00 43.00 1.70299 >>> 1.00000 -0.00010 1.00000 >>> 187 1 8.0 11.00 17.00 62.00 1.70210 >>> 1.00000 -0.00010 1.00000 >>> 188 1 8.0 1.00 21.00 70.00 1.70207 >>> 1.00000 -0.00010 1.00000 >>> 189 1 8.0 35.00 26.00 63.00 1.70166 >>> 1.00000 -0.00010 1.00000 >>> 190 1 8.0 11.00 37.00 66.00 1.70059 >>> 1.00000 -0.00010 1.00000 >>> 191 1 8.0 22.00 37.00 70.00 1.70035 >>> 1.00000 -0.00010 1.00000 >>> 192 1 8.0 25.00 14.00 22.00 1.69897 >>> 1.00000 -0.00010 1.00000 >>> >>> >>> Date: Tue, 25 Jun 2013 12:22:23 -0400 >>> From: Douglas N Greve <gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu>> >>> Subject: Re: [Freesurfer] Monte Carlo simulation: Talairach >>> coordinates >>> To: freesurfer@nmr.mgh.harvard.edu >>> <mailto:freesurfer@nmr.mgh.harvard.edu> >>> Message-ID: <51c9c3bf.7000...@nmr.mgh.harvard.edu >>> <mailto:51c9c3bf.7000...@nmr.mgh.harvard.edu>> >>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>> >>> can you send the file? >>> >>> On 06/25/2013 10:08 AM, Emily Boeke wrote: >>>> Hi All, >>>> >>>> I'm running Monte Carlo simulations on functional data, and the >>>> coordinate information outputted in the cluster.summary file isn't >>>> making sense. Usually the coordinates for the clusters listed are >>>> Talairach coordinates, but in the .summary files I'm getting, the >>>> coordinates are labeled "VoxX VoxY VoxZ" instead of "TalX TalY TalZ" >>>> and the numbers are clearly not Talairach coordinates. Above the >>>> table, it says "Reporting Coordinates in Voxel Indices." I also >>>> noted that in the descriptive information above the table, it says >>>> "Registration: None: Tal Coords invalid." >>>> >>>> However, the .nii files I'm seeing look like I would expect them too. >>>> >>>> I'm using the same command line I've run before, so I have no idea >>>> why the .summary file looks different. Does anyone know why this >>>> would be? >>>> >>>> Thanks, >>>> Emily >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . 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