OK, in later versions it will give you the talairach coords. I would download 5.3 and run your group analysis in that, just be careful not to run recon-all using 5.3 (unless you want to upgrade all your subjects). doug
On 07/02/2013 11:48 AM, Emily Boeke wrote: > 4.5 > > Emily > On Jul 2, 2013, at 11:45 AM, Douglas N Greve wrote: > >> Hi Emily, what version of FS are you using? >> doug >> >> >> On 07/02/2013 11:41 AM, Emily Boeke wrote: >>> Hi Doug, >>> >>> Sorry to be overly persistent, but I just wanted to make sure you saw this >>> email! >>> >>> Thanks, >>> Emily >>> >>> On Jul 1, 2013, at 9:20 AM, Emily Boeke wrote: >>> >>>> This was the command I ran: >>>> >>>> mri_glmfit-sim --glmdir tal.sm.wls.pct.rfx --sim mc-z 10000 2 >>>> HvL.SBQ.2.10000.pos --stim-sign pos >>>> >>>> On Jun 28, 2013, at 3:29 PM, Douglas N Greve wrote: >>>> >>>>> Hi Emily, what is your mri_glmfit-sim command line? >>>>> doug >>>>> >>>>> >>>>> On 06/28/2013 02:40 PM, Emily Boeke wrote: >>>>>> Any thoughts on why this file turned out this way? >>>>>> >>>>>> Thanks! >>>>>> Emily >>>>>> >>>>>> On Jun 26, 2013, at 8:09 AM, Emily Boeke wrote: >>>>>> >>>>>>> Sure, here it is: >>>>>>> >>>>>>> # Cluster Growing Summary (mri_volcluster) >>>>>>> # $Id: mri_volcluster.c,v 1.38.2.3 2009/01/16 02:26:36 greve Exp $ >>>>>>> # cwd >>>>>>> /autofs/cluster/maury/users/gcoombs/College_Risk/ObjectLooming/allSBQ_061213/st4-obj_ns-4runs/face_v_car >>>>>>> # cmdline mri_volcluster --in tal.sm.wls.pct.rfx//group/sig.mgh --csd >>>>>>> tal.sm.wls.pct.rfx//csd/HvL.SBQ.2.pos.j001-group.csd --mask >>>>>>> tal.sm.wls.pct.rfx//mask.mgh --cwsig >>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.mgh --vwsig >>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.voxel.mgh --sum >>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.summary --ocn >>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.ocn.mgh --csdpdf >>>>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.pdf.dat >>>>>>> # sysname Linux >>>>>>> # hostname compute-0-114 >>>>>>> # machine x86_64 >>>>>>> # user eboeke01 >>>>>>> # Input Volume: tal.sm.wls.pct.rfx//group/sig.mgh >>>>>>> # Frame Number: 0 >>>>>>> # Minimum Threshold: 2 >>>>>>> # Maximum Threshold: inifinity >>>>>>> # Threshold Sign: pos >>>>>>> # AdjustThreshWhenOneTail 1 >>>>>>> # Size Threshold: 0 mm^3 >>>>>>> # Size Threshold: 0 voxels >>>>>>> # Voxel Size: 8 mm^3 >>>>>>> # Registration: None : Tal Coords invalid >>>>>>> # Mask Vol: tal.sm.wls.pct.rfx//mask.mgh >>>>>>> # Mask Thresh: 0.500000 >>>>>>> # Mask Sign: abs >>>>>>> # Mask Invert: 0 >>>>>>> # AllowDiag: 0 >>>>>>> # NClusters 192 >>>>>>> # CSD thresh 2.000000 >>>>>>> # CSD nreps 10000 >>>>>>> # CSD simtype mc-z >>>>>>> # CSD contrast group >>>>>>> # CSD confint 90.000000 >>>>>>> # >>>>>>> # Reporting Coordinates in Voxel Indices >>>>>>> # Cluster Size(n) Size(mm^3) VoxX VoxY VoxZ >>>>>>> Max# CWP CWPLow CWPHi >>>>>>> 1 597 4776.0 30.00 50.00 65.00 >>>>>>> 5.94673 0.02490 0.02290 0.02690 >>>>>>> 2 730 5840.0 27.00 28.00 86.00 >>>>>>> 5.56628 0.00720 0.00610 0.00830 >>>>>>> 3 1124 8992.0 5.00 18.00 38.00 >>>>>>> 5.01850 0.00010 0.00000 0.00020 >>>>>>> 4 259 2072.0 59.00 20.00 78.00 >>>>>>> 5.01465 0.68360 0.67760 0.68960 >>>>>>> 5 279 2232.0 18.00 22.00 73.00 >>>>>>> 3.94952 0.58840 0.58210 0.59470 >>>>>>> 6 194 1552.0 35.00 66.00 76.00 >>>>>>> 3.94297 0.93630 0.93320 0.93940 >>>>>>> 7 664 5312.0 32.00 15.00 60.00 >>>>>>> 3.68551 0.01400 0.01250 0.01550 >>>>>>> 8 293 2344.0 28.00 5.00 58.00 >>>>>>> 3.66686 0.52560 0.51920 0.53200 >>>>>>> 9 49 392.0 12.00 52.00 58.00 >>>>>>> 3.63351 1.00000 -0.00010 1.00000 >>>>>>> 10 150 1200.0 5.00 4.00 28.00 >>>>>>> 3.62637 0.99560 0.99470 0.99640 >>>>>>> 11 298 2384.0 12.00 47.00 86.00 >>>>>>> 3.58250 0.50260 0.49620 0.50900 >>>>>>> 12 343 2744.0 13.00 39.00 60.00 >>>>>>> 3.57829 0.33900 0.33290 0.34510 >>>>>>> 13 467 3736.0 21.00 42.00 49.00 >>>>>>> 3.53307 0.09590 0.09210 0.09970 >>>>>>> 14 276 2208.0 49.00 36.00 56.00 >>>>>>> 3.51549 0.60280 0.59650 0.60910 >>>>>>> 15 134 1072.0 70.00 17.00 34.00 >>>>>>> 3.38623 0.99890 0.99850 0.99930 >>>>>>> 16 75 600.0 5.00 25.00 55.00 >>>>>>> 3.09334 1.00000 -0.00010 1.00000 >>>>>>> 17 74 592.0 13.00 10.00 49.00 >>>>>>> 3.03017 1.00000 -0.00010 1.00000 >>>>>>> 18 45 360.0 65.00 39.00 62.00 >>>>>>> 3.00205 1.00000 -0.00010 1.00000 >>>>>>> 19 15 120.0 72.00 7.00 42.00 >>>>>>> 2.96283 1.00000 -0.00010 1.00000 >>>>>>> 20 55 440.0 62.00 9.00 23.00 >>>>>>> 2.93121 1.00000 -0.00010 1.00000 >>>>>>> 21 79 632.0 46.00 60.00 87.00 >>>>>>> 2.92199 1.00000 -0.00010 1.00000 >>>>>>> 22 35 280.0 2.00 41.00 48.00 >>>>>>> 2.84065 1.00000 -0.00010 1.00000 >>>>>>> 23 44 352.0 6.00 35.00 27.00 >>>>>>> 2.80109 1.00000 -0.00010 1.00000 >>>>>>> 24 14 112.0 50.00 3.00 54.00 >>>>>>> 2.75399 1.00000 -0.00010 1.00000 >>>>>>> 25 71 568.0 0.00 22.00 9.00 >>>>>>> 2.75160 1.00000 -0.00010 1.00000 >>>>>>> 26 5 40.0 28.00 0.00 36.00 >>>>>>> 2.72535 1.00000 -0.00010 1.00000 >>>>>>> 27 130 1040.0 40.00 1.00 45.00 >>>>>>> 2.71826 0.99920 0.99880 0.99950 >>>>>>> 28 81 648.0 33.00 61.00 86.00 >>>>>>> 2.70040 1.00000 -0.00010 1.00000 >>>>>>> 29 73 584.0 67.00 26.00 52.00 >>>>>>> 2.68744 1.00000 -0.00010 1.00000 >>>>>>> 30 16 128.0 64.00 48.00 72.00 >>>>>>> 2.67636 1.00000 -0.00010 1.00000 >>>>>>> 31 28 224.0 75.00 35.00 88.00 >>>>>>> 2.65193 1.00000 -0.00010 1.00000 >>>>>>> 32 11 88.0 15.00 21.00 82.00 >>>>>>> 2.61771 1.00000 -0.00010 1.00000 >>>>>>> 33 5 40.0 45.00 0.00 27.00 >>>>>>> 2.61424 1.00000 -0.00010 1.00000 >>>>>>> 34 16 128.0 9.00 13.00 70.00 >>>>>>> 2.58842 1.00000 -0.00010 1.00000 >>>>>>> 35 23 184.0 15.00 27.00 48.00 >>>>>>> 2.57410 1.00000 -0.00010 1.00000 >>>>>>> 36 28 224.0 15.00 31.00 44.00 >>>>>>> 2.57219 1.00000 -0.00010 1.00000 >>>>>>> 37 23 184.0 29.00 56.00 78.00 >>>>>>> 2.55890 1.00000 -0.00010 1.00000 >>>>>>> 38 7 56.0 0.00 42.00 92.00 >>>>>>> 2.55525 1.00000 -0.00010 1.00000 >>>>>>> 39 49 392.0 52.00 40.00 88.00 >>>>>>> 2.54894 1.00000 -0.00010 1.00000 >>>>>>> 40 42 336.0 7.00 31.00 63.00 >>>>>>> 2.52160 1.00000 -0.00010 1.00000 >>>>>>> 41 37 296.0 22.00 43.00 81.00 >>>>>>> 2.50557 1.00000 -0.00010 1.00000 >>>>>>> 42 21 168.0 22.00 58.00 72.00 >>>>>>> 2.49912 1.00000 -0.00010 1.00000 >>>>>>> 43 32 256.0 59.00 45.00 91.00 >>>>>>> 2.44918 1.00000 -0.00010 1.00000 >>>>>>> 44 12 96.0 31.00 29.00 36.00 >>>>>>> 2.42939 1.00000 -0.00010 1.00000 >>>>>>> 45 50 400.0 14.00 34.00 26.00 >>>>>>> 2.42102 1.00000 -0.00010 1.00000 >>>>>>> 46 22 176.0 6.00 15.00 55.00 >>>>>>> 2.41349 1.00000 -0.00010 1.00000 >>>>>>> 47 12 96.0 9.00 43.00 42.00 >>>>>>> 2.40593 1.00000 -0.00010 1.00000 >>>>>>> 48 27 216.0 64.00 17.00 31.00 >>>>>>> 2.38351 1.00000 -0.00010 1.00000 >>>>>>> 49 16 128.0 25.00 49.00 81.00 >>>>>>> 2.37500 1.00000 -0.00010 1.00000 >>>>>>> 50 37 296.0 12.00 18.00 54.00 >>>>>>> 2.36836 1.00000 -0.00010 1.00000 >>>>>>> 51 22 176.0 43.00 50.00 63.00 >>>>>>> 2.35072 1.00000 -0.00010 1.00000 >>>>>>> 52 39 312.0 31.00 39.00 46.00 >>>>>>> 2.31633 1.00000 -0.00010 1.00000 >>>>>>> 53 7 56.0 75.00 60.00 84.00 >>>>>>> 2.28945 1.00000 -0.00010 1.00000 >>>>>>> 54 6 48.0 33.00 25.00 67.00 >>>>>>> 2.28154 1.00000 -0.00010 1.00000 >>>>>>> 55 10 80.0 49.00 40.00 33.00 >>>>>>> 2.27301 1.00000 -0.00010 1.00000 >>>>>>> 56 13 104.0 26.00 65.00 88.00 >>>>>>> 2.27017 1.00000 -0.00010 1.00000 >>>>>>> 57 6 48.0 13.00 25.00 26.00 >>>>>>> 2.26583 1.00000 -0.00010 1.00000 >>>>>>> 58 15 120.0 54.00 9.00 20.00 >>>>>>> 2.25868 1.00000 -0.00010 1.00000 >>>>>>> 59 16 128.0 63.00 14.00 19.00 >>>>>>> 2.21490 1.00000 -0.00010 1.00000 >>>>>>> 60 4 32.0 9.00 25.00 61.00 >>>>>>> 2.21056 1.00000 -0.00010 1.00000 >>>>>>> 61 37 296.0 25.00 37.00 62.00 >>>>>>> 2.21055 1.00000 -0.00010 1.00000 >>>>>>> 62 10 80.0 59.00 51.00 51.00 >>>>>>> 2.20982 1.00000 -0.00010 1.00000 >>>>>>> 63 20 160.0 66.00 41.00 51.00 >>>>>>> 2.19863 1.00000 -0.00010 1.00000 >>>>>>> 64 2 16.0 53.00 66.00 72.00 >>>>>>> 2.18410 1.00000 -0.00010 1.00000 >>>>>>> 65 9 72.0 37.00 38.00 66.00 >>>>>>> 2.17739 1.00000 -0.00010 1.00000 >>>>>>> 66 6 48.0 6.00 44.00 62.00 >>>>>>> 2.17461 1.00000 -0.00010 1.00000 >>>>>>> 67 39 312.0 50.00 35.00 70.00 >>>>>>> 2.16322 1.00000 -0.00010 1.00000 >>>>>>> 68 11 88.0 52.00 6.00 21.00 >>>>>>> 2.16002 1.00000 -0.00010 1.00000 >>>>>>> 69 6 48.0 26.00 0.00 43.00 >>>>>>> 2.15030 1.00000 -0.00010 1.00000 >>>>>>> 70 8 64.0 41.00 16.00 19.00 >>>>>>> 2.14875 1.00000 -0.00010 1.00000 >>>>>>> 71 4 32.0 51.00 8.00 39.00 >>>>>>> 2.14592 1.00000 -0.00010 1.00000 >>>>>>> 72 3 24.0 47.00 9.00 21.00 >>>>>>> 2.14285 1.00000 -0.00010 1.00000 >>>>>>> 73 8 64.0 67.00 19.00 27.00 >>>>>>> 2.14034 1.00000 -0.00010 1.00000 >>>>>>> 74 12 96.0 3.00 59.00 86.00 >>>>>>> 2.13879 1.00000 -0.00010 1.00000 >>>>>>> 75 3 24.0 15.00 6.00 19.00 >>>>>>> 2.13024 1.00000 -0.00010 1.00000 >>>>>>> 76 9 72.0 59.00 41.00 41.00 >>>>>>> 2.12204 1.00000 -0.00010 1.00000 >>>>>>> 77 18 144.0 35.00 48.00 55.00 >>>>>>> 2.10334 1.00000 -0.00010 1.00000 >>>>>>> 78 6 48.0 40.00 57.00 92.00 >>>>>>> 2.08841 1.00000 -0.00010 1.00000 >>>>>>> 79 7 56.0 43.00 1.00 17.00 >>>>>>> 2.07371 1.00000 -0.00010 1.00000 >>>>>>> 80 6 48.0 41.00 55.00 69.00 >>>>>>> 2.07007 1.00000 -0.00010 1.00000 >>>>>>> 81 14 112.0 23.00 35.00 88.00 >>>>>>> 2.06307 1.00000 -0.00010 1.00000 >>>>>>> 82 11 88.0 40.00 73.00 82.00 >>>>>>> 2.05213 1.00000 -0.00010 1.00000 >>>>>>> 83 5 40.0 39.00 19.00 51.00 >>>>>>> 2.04809 1.00000 -0.00010 1.00000 >>>>>>> 84 10 80.0 38.00 24.00 69.00 >>>>>>> 2.04252 1.00000 -0.00010 1.00000 >>>>>>> 85 9 72.0 30.00 32.00 67.00 >>>>>>> 2.04237 1.00000 -0.00010 1.00000 >>>>>>> 86 7 56.0 54.00 58.00 72.00 >>>>>>> 2.03645 1.00000 -0.00010 1.00000 >>>>>>> 87 10 80.0 30.00 13.00 22.00 >>>>>>> 2.03577 1.00000 -0.00010 1.00000 >>>>>>> 88 8 64.0 0.00 25.00 72.00 >>>>>>> 2.03193 1.00000 -0.00010 1.00000 >>>>>>> 89 5 40.0 7.00 23.00 6.00 >>>>>>> 2.02805 1.00000 -0.00010 1.00000 >>>>>>> 90 4 32.0 59.00 28.00 21.00 >>>>>>> 2.02245 1.00000 -0.00010 1.00000 >>>>>>> 91 11 88.0 43.00 18.00 63.00 >>>>>>> 2.01764 1.00000 -0.00010 1.00000 >>>>>>> 92 5 40.0 14.00 41.00 87.00 >>>>>>> 2.01255 1.00000 -0.00010 1.00000 >>>>>>> 93 3 24.0 28.00 50.00 55.00 >>>>>>> 2.01226 1.00000 -0.00010 1.00000 >>>>>>> 94 6 48.0 35.00 0.00 43.00 >>>>>>> 1.99869 1.00000 -0.00010 1.00000 >>>>>>> 95 1 8.0 59.00 57.00 79.00 >>>>>>> 1.99505 1.00000 -0.00010 1.00000 >>>>>>> 96 1 8.0 25.00 2.00 51.00 >>>>>>> 1.99394 1.00000 -0.00010 1.00000 >>>>>>> 97 4 32.0 55.00 4.00 36.00 >>>>>>> 1.98505 1.00000 -0.00010 1.00000 >>>>>>> 98 2 16.0 66.00 21.00 6.00 >>>>>>> 1.97461 1.00000 -0.00010 1.00000 >>>>>>> 99 3 24.0 31.00 51.00 90.00 >>>>>>> 1.97154 1.00000 -0.00010 1.00000 >>>>>>> 100 3 24.0 12.00 11.00 23.00 >>>>>>> 1.95664 1.00000 -0.00010 1.00000 >>>>>>> 101 5 40.0 38.00 43.00 50.00 >>>>>>> 1.95222 1.00000 -0.00010 1.00000 >>>>>>> 102 2 16.0 28.00 22.00 7.00 >>>>>>> 1.95066 1.00000 -0.00010 1.00000 >>>>>>> 103 4 32.0 20.00 17.00 69.00 >>>>>>> 1.94669 1.00000 -0.00010 1.00000 >>>>>>> 104 5 40.0 1.00 8.00 46.00 >>>>>>> 1.94587 1.00000 -0.00010 1.00000 >>>>>>> 105 4 32.0 42.00 15.00 49.00 >>>>>>> 1.94354 1.00000 -0.00010 1.00000 >>>>>>> 106 4 32.0 4.00 41.00 54.00 >>>>>>> 1.93906 1.00000 -0.00010 1.00000 >>>>>>> 107 3 24.0 15.00 9.00 33.00 >>>>>>> 1.93848 1.00000 -0.00010 1.00000 >>>>>>> 108 6 48.0 61.00 28.00 72.00 >>>>>>> 1.92516 1.00000 -0.00010 1.00000 >>>>>>> 109 1 8.0 49.00 26.00 88.00 >>>>>>> 1.92457 1.00000 -0.00010 1.00000 >>>>>>> 110 3 24.0 65.00 37.00 41.00 >>>>>>> 1.92365 1.00000 -0.00010 1.00000 >>>>>>> 111 3 24.0 69.00 29.00 25.00 >>>>>>> 1.91576 1.00000 -0.00010 1.00000 >>>>>>> 112 2 16.0 70.00 15.00 9.00 >>>>>>> 1.89931 1.00000 -0.00010 1.00000 >>>>>>> 113 2 16.0 65.00 24.00 70.00 >>>>>>> 1.89719 1.00000 -0.00010 1.00000 >>>>>>> 114 1 8.0 41.00 24.00 36.00 >>>>>>> 1.89653 1.00000 -0.00010 1.00000 >>>>>>> 115 7 56.0 71.00 32.00 91.00 >>>>>>> 1.89529 1.00000 -0.00010 1.00000 >>>>>>> 116 6 48.0 24.00 38.00 69.00 >>>>>>> 1.88993 1.00000 -0.00010 1.00000 >>>>>>> 117 4 32.0 6.00 22.00 34.00 >>>>>>> 1.88833 1.00000 -0.00010 1.00000 >>>>>>> 118 3 24.0 41.00 45.00 51.00 >>>>>>> 1.87881 1.00000 -0.00010 1.00000 >>>>>>> 119 2 16.0 18.00 58.00 91.00 >>>>>>> 1.87841 1.00000 -0.00010 1.00000 >>>>>>> 120 3 24.0 44.00 10.00 17.00 >>>>>>> 1.87792 1.00000 -0.00010 1.00000 >>>>>>> 121 4 32.0 7.00 38.00 71.00 >>>>>>> 1.87444 1.00000 -0.00010 1.00000 >>>>>>> 122 2 16.0 39.00 12.00 65.00 >>>>>>> 1.87242 1.00000 -0.00010 1.00000 >>>>>>> 123 7 56.0 25.00 35.00 38.00 >>>>>>> 1.87054 1.00000 -0.00010 1.00000 >>>>>>> 124 3 24.0 14.00 28.00 25.00 >>>>>>> 1.86776 1.00000 -0.00010 1.00000 >>>>>>> 125 4 32.0 64.00 23.00 76.00 >>>>>>> 1.86629 1.00000 -0.00010 1.00000 >>>>>>> 126 7 56.0 58.00 44.00 43.00 >>>>>>> 1.86598 1.00000 -0.00010 1.00000 >>>>>>> 127 1 8.0 40.00 44.00 63.00 >>>>>>> 1.86487 1.00000 -0.00010 1.00000 >>>>>>> 128 1 8.0 19.00 8.00 55.00 >>>>>>> 1.84677 1.00000 -0.00010 1.00000 >>>>>>> 129 1 8.0 59.00 58.00 80.00 >>>>>>> 1.84162 1.00000 -0.00010 1.00000 >>>>>>> 130 1 8.0 16.00 40.00 92.00 >>>>>>> 1.83828 1.00000 -0.00010 1.00000 >>>>>>> 131 2 16.0 21.00 42.00 63.00 >>>>>>> 1.83258 1.00000 -0.00010 1.00000 >>>>>>> 132 6 48.0 2.00 19.00 69.00 >>>>>>> 1.82733 1.00000 -0.00010 1.00000 >>>>>>> 133 1 8.0 25.00 45.00 73.00 >>>>>>> 1.81604 1.00000 -0.00010 1.00000 >>>>>>> 134 1 8.0 6.00 10.00 48.00 >>>>>>> 1.81496 1.00000 -0.00010 1.00000 >>>>>>> 135 2 16.0 9.00 7.00 43.00 >>>>>>> 1.80712 1.00000 -0.00010 1.00000 >>>>>>> 136 1 8.0 36.00 2.00 53.00 >>>>>>> 1.80667 1.00000 -0.00010 1.00000 >>>>>>> 137 1 8.0 19.00 43.00 60.00 >>>>>>> 1.80358 1.00000 -0.00010 1.00000 >>>>>>> 138 1 8.0 24.00 0.00 25.00 >>>>>>> 1.80337 1.00000 -0.00010 1.00000 >>>>>>> 139 2 16.0 25.00 5.00 42.00 >>>>>>> 1.79990 1.00000 -0.00010 1.00000 >>>>>>> 140 4 32.0 69.00 18.00 40.00 >>>>>>> 1.79854 1.00000 -0.00010 1.00000 >>>>>>> 141 1 8.0 62.00 48.00 85.00 >>>>>>> 1.79309 1.00000 -0.00010 1.00000 >>>>>>> 142 4 32.0 61.00 43.00 84.00 >>>>>>> 1.78916 1.00000 -0.00010 1.00000 >>>>>>> 143 1 8.0 13.00 13.00 34.00 >>>>>>> 1.78877 1.00000 -0.00010 1.00000 >>>>>>> 144 1 8.0 34.00 28.00 78.00 >>>>>>> 1.78826 1.00000 -0.00010 1.00000 >>>>>>> 145 3 24.0 69.00 32.00 83.00 >>>>>>> 1.78152 1.00000 -0.00010 1.00000 >>>>>>> 146 1 8.0 14.00 11.00 33.00 >>>>>>> 1.78004 1.00000 -0.00010 1.00000 >>>>>>> 147 1 8.0 70.00 19.00 25.00 >>>>>>> 1.77961 1.00000 -0.00010 1.00000 >>>>>>> 148 1 8.0 24.00 1.00 50.00 >>>>>>> 1.77625 1.00000 -0.00010 1.00000 >>>>>>> 149 1 8.0 3.00 35.00 84.00 >>>>>>> 1.77073 1.00000 -0.00010 1.00000 >>>>>>> 150 1 8.0 22.00 43.00 64.00 >>>>>>> 1.77048 1.00000 -0.00010 1.00000 >>>>>>> 151 1 8.0 25.00 63.00 83.00 >>>>>>> 1.76957 1.00000 -0.00010 1.00000 >>>>>>> 152 1 8.0 52.00 57.00 72.00 >>>>>>> 1.76913 1.00000 -0.00010 1.00000 >>>>>>> 153 1 8.0 6.00 24.00 31.00 >>>>>>> 1.76905 1.00000 -0.00010 1.00000 >>>>>>> 154 1 8.0 7.00 37.00 72.00 >>>>>>> 1.76885 1.00000 -0.00010 1.00000 >>>>>>> 155 2 16.0 75.00 24.00 12.00 >>>>>>> 1.76788 1.00000 -0.00010 1.00000 >>>>>>> 156 1 8.0 64.00 38.00 42.00 >>>>>>> 1.76533 1.00000 -0.00010 1.00000 >>>>>>> 157 1 8.0 54.00 32.00 84.00 >>>>>>> 1.76446 1.00000 -0.00010 1.00000 >>>>>>> 158 1 8.0 23.00 38.00 88.00 >>>>>>> 1.76098 1.00000 -0.00010 1.00000 >>>>>>> 159 1 8.0 6.00 40.00 33.00 >>>>>>> 1.75765 1.00000 -0.00010 1.00000 >>>>>>> 160 1 8.0 22.00 25.00 9.00 >>>>>>> 1.75009 1.00000 -0.00010 1.00000 >>>>>>> 161 2 16.0 67.00 3.00 52.00 >>>>>>> 1.74760 1.00000 -0.00010 1.00000 >>>>>>> 162 2 16.0 28.00 67.00 70.00 >>>>>>> 1.74531 1.00000 -0.00010 1.00000 >>>>>>> 163 1 8.0 4.00 33.00 30.00 >>>>>>> 1.74303 1.00000 -0.00010 1.00000 >>>>>>> 164 1 8.0 69.00 20.00 74.00 >>>>>>> 1.74160 1.00000 -0.00010 1.00000 >>>>>>> 165 1 8.0 18.00 21.00 55.00 >>>>>>> 1.74153 1.00000 -0.00010 1.00000 >>>>>>> 166 2 16.0 31.00 25.00 80.00 >>>>>>> 1.73939 1.00000 -0.00010 1.00000 >>>>>>> 167 2 16.0 22.00 40.00 63.00 >>>>>>> 1.73425 1.00000 -0.00010 1.00000 >>>>>>> 168 2 16.0 68.00 21.00 74.00 >>>>>>> 1.72982 1.00000 -0.00010 1.00000 >>>>>>> 169 2 16.0 7.00 18.00 27.00 >>>>>>> 1.72964 1.00000 -0.00010 1.00000 >>>>>>> 170 1 8.0 11.00 29.00 60.00 >>>>>>> 1.72963 1.00000 -0.00010 1.00000 >>>>>>> 171 1 8.0 25.00 65.00 86.00 >>>>>>> 1.72933 1.00000 -0.00010 1.00000 >>>>>>> 172 1 8.0 40.00 10.00 56.00 >>>>>>> 1.72897 1.00000 -0.00010 1.00000 >>>>>>> 173 2 16.0 40.00 56.00 61.00 >>>>>>> 1.72244 1.00000 -0.00010 1.00000 >>>>>>> 174 1 8.0 17.00 67.00 74.00 >>>>>>> 1.72103 1.00000 -0.00010 1.00000 >>>>>>> 175 1 8.0 42.00 67.00 70.00 >>>>>>> 1.71913 1.00000 -0.00010 1.00000 >>>>>>> 176 1 8.0 25.00 64.00 85.00 >>>>>>> 1.71646 1.00000 -0.00010 1.00000 >>>>>>> 177 1 8.0 9.00 38.00 73.00 >>>>>>> 1.71532 1.00000 -0.00010 1.00000 >>>>>>> 178 1 8.0 4.00 34.00 31.00 >>>>>>> 1.71458 1.00000 -0.00010 1.00000 >>>>>>> 179 1 8.0 3.00 22.00 7.00 >>>>>>> 1.71416 1.00000 -0.00010 1.00000 >>>>>>> 180 1 8.0 31.00 50.00 89.00 >>>>>>> 1.71002 1.00000 -0.00010 1.00000 >>>>>>> 181 1 8.0 51.00 7.00 19.00 >>>>>>> 1.70870 1.00000 -0.00010 1.00000 >>>>>>> 182 1 8.0 43.00 1.00 48.00 >>>>>>> 1.70621 1.00000 -0.00010 1.00000 >>>>>>> 183 1 8.0 22.00 36.00 41.00 >>>>>>> 1.70538 1.00000 -0.00010 1.00000 >>>>>>> 184 1 8.0 1.00 22.00 71.00 >>>>>>> 1.70431 1.00000 -0.00010 1.00000 >>>>>>> 185 1 8.0 65.00 20.00 5.00 >>>>>>> 1.70426 1.00000 -0.00010 1.00000 >>>>>>> 186 1 8.0 70.00 10.00 43.00 >>>>>>> 1.70299 1.00000 -0.00010 1.00000 >>>>>>> 187 1 8.0 11.00 17.00 62.00 >>>>>>> 1.70210 1.00000 -0.00010 1.00000 >>>>>>> 188 1 8.0 1.00 21.00 70.00 >>>>>>> 1.70207 1.00000 -0.00010 1.00000 >>>>>>> 189 1 8.0 35.00 26.00 63.00 >>>>>>> 1.70166 1.00000 -0.00010 1.00000 >>>>>>> 190 1 8.0 11.00 37.00 66.00 >>>>>>> 1.70059 1.00000 -0.00010 1.00000 >>>>>>> 191 1 8.0 22.00 37.00 70.00 >>>>>>> 1.70035 1.00000 -0.00010 1.00000 >>>>>>> 192 1 8.0 25.00 14.00 22.00 >>>>>>> 1.69897 1.00000 -0.00010 1.00000 >>>>>>> >>>>>>> >>>>>>> Date: Tue, 25 Jun 2013 12:22:23 -0400 >>>>>>> From: Douglas N Greve <gr...@nmr.mgh.harvard.edu >>>>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>>>> Subject: Re: [Freesurfer] Monte Carlo simulation: Talairach >>>>>>> coordinates >>>>>>> To: freesurfer@nmr.mgh.harvard.edu >>>>>>> <mailto:freesurfer@nmr.mgh.harvard.edu> >>>>>>> Message-ID: <51c9c3bf.7000...@nmr.mgh.harvard.edu >>>>>>> <mailto:51c9c3bf.7000...@nmr.mgh.harvard.edu>> >>>>>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>>>>>> >>>>>>> can you send the file? >>>>>>> >>>>>>> On 06/25/2013 10:08 AM, Emily Boeke wrote: >>>>>>>> Hi All, >>>>>>>> >>>>>>>> I'm running Monte Carlo simulations on functional data, and the >>>>>>>> coordinate information outputted in the cluster.summary file isn't >>>>>>>> making sense. Usually the coordinates for the clusters listed are >>>>>>>> Talairach coordinates, but in the .summary files I'm getting, the >>>>>>>> coordinates are labeled "VoxX VoxY VoxZ" instead of "TalX TalY TalZ" >>>>>>>> and the numbers are clearly not Talairach coordinates. Above the >>>>>>>> table, it says "Reporting Coordinates in Voxel Indices." I also >>>>>>>> noted that in the descriptive information above the table, it says >>>>>>>> "Registration: None: Tal Coords invalid." >>>>>>>> >>>>>>>> However, the .nii files I'm seeing look like I would expect them too. >>>>>>>> >>>>>>>> I'm using the same command line I've run before, so I have no idea >>>>>>>> why the .summary file looks different. Does anyone know why this >>>>>>>> would be? >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Emily >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
