Hi Emily, what version of FS are you using? doug
On 07/02/2013 11:41 AM, Emily Boeke wrote: > Hi Doug, > > Sorry to be overly persistent, but I just wanted to make sure you saw this > email! > > Thanks, > Emily > > On Jul 1, 2013, at 9:20 AM, Emily Boeke wrote: > >> This was the command I ran: >> >> mri_glmfit-sim --glmdir tal.sm.wls.pct.rfx --sim mc-z 10000 2 >> HvL.SBQ.2.10000.pos --stim-sign pos >> >> On Jun 28, 2013, at 3:29 PM, Douglas N Greve wrote: >> >>> Hi Emily, what is your mri_glmfit-sim command line? >>> doug >>> >>> >>> On 06/28/2013 02:40 PM, Emily Boeke wrote: >>>> Any thoughts on why this file turned out this way? >>>> >>>> Thanks! >>>> Emily >>>> >>>> On Jun 26, 2013, at 8:09 AM, Emily Boeke wrote: >>>> >>>>> Sure, here it is: >>>>> >>>>> # Cluster Growing Summary (mri_volcluster) >>>>> # $Id: mri_volcluster.c,v 1.38.2.3 2009/01/16 02:26:36 greve Exp $ >>>>> # cwd >>>>> /autofs/cluster/maury/users/gcoombs/College_Risk/ObjectLooming/allSBQ_061213/st4-obj_ns-4runs/face_v_car >>>>> # cmdline mri_volcluster --in tal.sm.wls.pct.rfx//group/sig.mgh --csd >>>>> tal.sm.wls.pct.rfx//csd/HvL.SBQ.2.pos.j001-group.csd --mask >>>>> tal.sm.wls.pct.rfx//mask.mgh --cwsig >>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.mgh --vwsig >>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.voxel.mgh --sum >>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.cluster.summary --ocn >>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.sig.ocn.mgh --csdpdf >>>>> tal.sm.wls.pct.rfx//group/HvL.SBQ.2.pos.pdf.dat >>>>> # sysname Linux >>>>> # hostname compute-0-114 >>>>> # machine x86_64 >>>>> # user eboeke01 >>>>> # Input Volume: tal.sm.wls.pct.rfx//group/sig.mgh >>>>> # Frame Number: 0 >>>>> # Minimum Threshold: 2 >>>>> # Maximum Threshold: inifinity >>>>> # Threshold Sign: pos >>>>> # AdjustThreshWhenOneTail 1 >>>>> # Size Threshold: 0 mm^3 >>>>> # Size Threshold: 0 voxels >>>>> # Voxel Size: 8 mm^3 >>>>> # Registration: None : Tal Coords invalid >>>>> # Mask Vol: tal.sm.wls.pct.rfx//mask.mgh >>>>> # Mask Thresh: 0.500000 >>>>> # Mask Sign: abs >>>>> # Mask Invert: 0 >>>>> # AllowDiag: 0 >>>>> # NClusters 192 >>>>> # CSD thresh 2.000000 >>>>> # CSD nreps 10000 >>>>> # CSD simtype mc-z >>>>> # CSD contrast group >>>>> # CSD confint 90.000000 >>>>> # >>>>> # Reporting Coordinates in Voxel Indices >>>>> # Cluster Size(n) Size(mm^3) VoxX VoxY VoxZ >>>>> Max# CWP CWPLow CWPHi >>>>> 1 597 4776.0 30.00 50.00 65.00 5.94673 >>>>> 0.02490 0.02290 0.02690 >>>>> 2 730 5840.0 27.00 28.00 86.00 5.56628 >>>>> 0.00720 0.00610 0.00830 >>>>> 3 1124 8992.0 5.00 18.00 38.00 5.01850 >>>>> 0.00010 0.00000 0.00020 >>>>> 4 259 2072.0 59.00 20.00 78.00 5.01465 >>>>> 0.68360 0.67760 0.68960 >>>>> 5 279 2232.0 18.00 22.00 73.00 3.94952 >>>>> 0.58840 0.58210 0.59470 >>>>> 6 194 1552.0 35.00 66.00 76.00 3.94297 >>>>> 0.93630 0.93320 0.93940 >>>>> 7 664 5312.0 32.00 15.00 60.00 3.68551 >>>>> 0.01400 0.01250 0.01550 >>>>> 8 293 2344.0 28.00 5.00 58.00 3.66686 >>>>> 0.52560 0.51920 0.53200 >>>>> 9 49 392.0 12.00 52.00 58.00 3.63351 >>>>> 1.00000 -0.00010 1.00000 >>>>> 10 150 1200.0 5.00 4.00 28.00 3.62637 >>>>> 0.99560 0.99470 0.99640 >>>>> 11 298 2384.0 12.00 47.00 86.00 3.58250 >>>>> 0.50260 0.49620 0.50900 >>>>> 12 343 2744.0 13.00 39.00 60.00 3.57829 >>>>> 0.33900 0.33290 0.34510 >>>>> 13 467 3736.0 21.00 42.00 49.00 3.53307 >>>>> 0.09590 0.09210 0.09970 >>>>> 14 276 2208.0 49.00 36.00 56.00 3.51549 >>>>> 0.60280 0.59650 0.60910 >>>>> 15 134 1072.0 70.00 17.00 34.00 3.38623 >>>>> 0.99890 0.99850 0.99930 >>>>> 16 75 600.0 5.00 25.00 55.00 3.09334 >>>>> 1.00000 -0.00010 1.00000 >>>>> 17 74 592.0 13.00 10.00 49.00 3.03017 >>>>> 1.00000 -0.00010 1.00000 >>>>> 18 45 360.0 65.00 39.00 62.00 3.00205 >>>>> 1.00000 -0.00010 1.00000 >>>>> 19 15 120.0 72.00 7.00 42.00 2.96283 >>>>> 1.00000 -0.00010 1.00000 >>>>> 20 55 440.0 62.00 9.00 23.00 2.93121 >>>>> 1.00000 -0.00010 1.00000 >>>>> 21 79 632.0 46.00 60.00 87.00 2.92199 >>>>> 1.00000 -0.00010 1.00000 >>>>> 22 35 280.0 2.00 41.00 48.00 2.84065 >>>>> 1.00000 -0.00010 1.00000 >>>>> 23 44 352.0 6.00 35.00 27.00 2.80109 >>>>> 1.00000 -0.00010 1.00000 >>>>> 24 14 112.0 50.00 3.00 54.00 2.75399 >>>>> 1.00000 -0.00010 1.00000 >>>>> 25 71 568.0 0.00 22.00 9.00 2.75160 >>>>> 1.00000 -0.00010 1.00000 >>>>> 26 5 40.0 28.00 0.00 36.00 2.72535 >>>>> 1.00000 -0.00010 1.00000 >>>>> 27 130 1040.0 40.00 1.00 45.00 2.71826 >>>>> 0.99920 0.99880 0.99950 >>>>> 28 81 648.0 33.00 61.00 86.00 2.70040 >>>>> 1.00000 -0.00010 1.00000 >>>>> 29 73 584.0 67.00 26.00 52.00 2.68744 >>>>> 1.00000 -0.00010 1.00000 >>>>> 30 16 128.0 64.00 48.00 72.00 2.67636 >>>>> 1.00000 -0.00010 1.00000 >>>>> 31 28 224.0 75.00 35.00 88.00 2.65193 >>>>> 1.00000 -0.00010 1.00000 >>>>> 32 11 88.0 15.00 21.00 82.00 2.61771 >>>>> 1.00000 -0.00010 1.00000 >>>>> 33 5 40.0 45.00 0.00 27.00 2.61424 >>>>> 1.00000 -0.00010 1.00000 >>>>> 34 16 128.0 9.00 13.00 70.00 2.58842 >>>>> 1.00000 -0.00010 1.00000 >>>>> 35 23 184.0 15.00 27.00 48.00 2.57410 >>>>> 1.00000 -0.00010 1.00000 >>>>> 36 28 224.0 15.00 31.00 44.00 2.57219 >>>>> 1.00000 -0.00010 1.00000 >>>>> 37 23 184.0 29.00 56.00 78.00 2.55890 >>>>> 1.00000 -0.00010 1.00000 >>>>> 38 7 56.0 0.00 42.00 92.00 2.55525 >>>>> 1.00000 -0.00010 1.00000 >>>>> 39 49 392.0 52.00 40.00 88.00 2.54894 >>>>> 1.00000 -0.00010 1.00000 >>>>> 40 42 336.0 7.00 31.00 63.00 2.52160 >>>>> 1.00000 -0.00010 1.00000 >>>>> 41 37 296.0 22.00 43.00 81.00 2.50557 >>>>> 1.00000 -0.00010 1.00000 >>>>> 42 21 168.0 22.00 58.00 72.00 2.49912 >>>>> 1.00000 -0.00010 1.00000 >>>>> 43 32 256.0 59.00 45.00 91.00 2.44918 >>>>> 1.00000 -0.00010 1.00000 >>>>> 44 12 96.0 31.00 29.00 36.00 2.42939 >>>>> 1.00000 -0.00010 1.00000 >>>>> 45 50 400.0 14.00 34.00 26.00 2.42102 >>>>> 1.00000 -0.00010 1.00000 >>>>> 46 22 176.0 6.00 15.00 55.00 2.41349 >>>>> 1.00000 -0.00010 1.00000 >>>>> 47 12 96.0 9.00 43.00 42.00 2.40593 >>>>> 1.00000 -0.00010 1.00000 >>>>> 48 27 216.0 64.00 17.00 31.00 2.38351 >>>>> 1.00000 -0.00010 1.00000 >>>>> 49 16 128.0 25.00 49.00 81.00 2.37500 >>>>> 1.00000 -0.00010 1.00000 >>>>> 50 37 296.0 12.00 18.00 54.00 2.36836 >>>>> 1.00000 -0.00010 1.00000 >>>>> 51 22 176.0 43.00 50.00 63.00 2.35072 >>>>> 1.00000 -0.00010 1.00000 >>>>> 52 39 312.0 31.00 39.00 46.00 2.31633 >>>>> 1.00000 -0.00010 1.00000 >>>>> 53 7 56.0 75.00 60.00 84.00 2.28945 >>>>> 1.00000 -0.00010 1.00000 >>>>> 54 6 48.0 33.00 25.00 67.00 2.28154 >>>>> 1.00000 -0.00010 1.00000 >>>>> 55 10 80.0 49.00 40.00 33.00 2.27301 >>>>> 1.00000 -0.00010 1.00000 >>>>> 56 13 104.0 26.00 65.00 88.00 2.27017 >>>>> 1.00000 -0.00010 1.00000 >>>>> 57 6 48.0 13.00 25.00 26.00 2.26583 >>>>> 1.00000 -0.00010 1.00000 >>>>> 58 15 120.0 54.00 9.00 20.00 2.25868 >>>>> 1.00000 -0.00010 1.00000 >>>>> 59 16 128.0 63.00 14.00 19.00 2.21490 >>>>> 1.00000 -0.00010 1.00000 >>>>> 60 4 32.0 9.00 25.00 61.00 2.21056 >>>>> 1.00000 -0.00010 1.00000 >>>>> 61 37 296.0 25.00 37.00 62.00 2.21055 >>>>> 1.00000 -0.00010 1.00000 >>>>> 62 10 80.0 59.00 51.00 51.00 2.20982 >>>>> 1.00000 -0.00010 1.00000 >>>>> 63 20 160.0 66.00 41.00 51.00 2.19863 >>>>> 1.00000 -0.00010 1.00000 >>>>> 64 2 16.0 53.00 66.00 72.00 2.18410 >>>>> 1.00000 -0.00010 1.00000 >>>>> 65 9 72.0 37.00 38.00 66.00 2.17739 >>>>> 1.00000 -0.00010 1.00000 >>>>> 66 6 48.0 6.00 44.00 62.00 2.17461 >>>>> 1.00000 -0.00010 1.00000 >>>>> 67 39 312.0 50.00 35.00 70.00 2.16322 >>>>> 1.00000 -0.00010 1.00000 >>>>> 68 11 88.0 52.00 6.00 21.00 2.16002 >>>>> 1.00000 -0.00010 1.00000 >>>>> 69 6 48.0 26.00 0.00 43.00 2.15030 >>>>> 1.00000 -0.00010 1.00000 >>>>> 70 8 64.0 41.00 16.00 19.00 2.14875 >>>>> 1.00000 -0.00010 1.00000 >>>>> 71 4 32.0 51.00 8.00 39.00 2.14592 >>>>> 1.00000 -0.00010 1.00000 >>>>> 72 3 24.0 47.00 9.00 21.00 2.14285 >>>>> 1.00000 -0.00010 1.00000 >>>>> 73 8 64.0 67.00 19.00 27.00 2.14034 >>>>> 1.00000 -0.00010 1.00000 >>>>> 74 12 96.0 3.00 59.00 86.00 2.13879 >>>>> 1.00000 -0.00010 1.00000 >>>>> 75 3 24.0 15.00 6.00 19.00 2.13024 >>>>> 1.00000 -0.00010 1.00000 >>>>> 76 9 72.0 59.00 41.00 41.00 2.12204 >>>>> 1.00000 -0.00010 1.00000 >>>>> 77 18 144.0 35.00 48.00 55.00 2.10334 >>>>> 1.00000 -0.00010 1.00000 >>>>> 78 6 48.0 40.00 57.00 92.00 2.08841 >>>>> 1.00000 -0.00010 1.00000 >>>>> 79 7 56.0 43.00 1.00 17.00 2.07371 >>>>> 1.00000 -0.00010 1.00000 >>>>> 80 6 48.0 41.00 55.00 69.00 2.07007 >>>>> 1.00000 -0.00010 1.00000 >>>>> 81 14 112.0 23.00 35.00 88.00 2.06307 >>>>> 1.00000 -0.00010 1.00000 >>>>> 82 11 88.0 40.00 73.00 82.00 2.05213 >>>>> 1.00000 -0.00010 1.00000 >>>>> 83 5 40.0 39.00 19.00 51.00 2.04809 >>>>> 1.00000 -0.00010 1.00000 >>>>> 84 10 80.0 38.00 24.00 69.00 2.04252 >>>>> 1.00000 -0.00010 1.00000 >>>>> 85 9 72.0 30.00 32.00 67.00 2.04237 >>>>> 1.00000 -0.00010 1.00000 >>>>> 86 7 56.0 54.00 58.00 72.00 2.03645 >>>>> 1.00000 -0.00010 1.00000 >>>>> 87 10 80.0 30.00 13.00 22.00 2.03577 >>>>> 1.00000 -0.00010 1.00000 >>>>> 88 8 64.0 0.00 25.00 72.00 2.03193 >>>>> 1.00000 -0.00010 1.00000 >>>>> 89 5 40.0 7.00 23.00 6.00 2.02805 >>>>> 1.00000 -0.00010 1.00000 >>>>> 90 4 32.0 59.00 28.00 21.00 2.02245 >>>>> 1.00000 -0.00010 1.00000 >>>>> 91 11 88.0 43.00 18.00 63.00 2.01764 >>>>> 1.00000 -0.00010 1.00000 >>>>> 92 5 40.0 14.00 41.00 87.00 2.01255 >>>>> 1.00000 -0.00010 1.00000 >>>>> 93 3 24.0 28.00 50.00 55.00 2.01226 >>>>> 1.00000 -0.00010 1.00000 >>>>> 94 6 48.0 35.00 0.00 43.00 1.99869 >>>>> 1.00000 -0.00010 1.00000 >>>>> 95 1 8.0 59.00 57.00 79.00 1.99505 >>>>> 1.00000 -0.00010 1.00000 >>>>> 96 1 8.0 25.00 2.00 51.00 1.99394 >>>>> 1.00000 -0.00010 1.00000 >>>>> 97 4 32.0 55.00 4.00 36.00 1.98505 >>>>> 1.00000 -0.00010 1.00000 >>>>> 98 2 16.0 66.00 21.00 6.00 1.97461 >>>>> 1.00000 -0.00010 1.00000 >>>>> 99 3 24.0 31.00 51.00 90.00 1.97154 >>>>> 1.00000 -0.00010 1.00000 >>>>> 100 3 24.0 12.00 11.00 23.00 1.95664 >>>>> 1.00000 -0.00010 1.00000 >>>>> 101 5 40.0 38.00 43.00 50.00 1.95222 >>>>> 1.00000 -0.00010 1.00000 >>>>> 102 2 16.0 28.00 22.00 7.00 1.95066 >>>>> 1.00000 -0.00010 1.00000 >>>>> 103 4 32.0 20.00 17.00 69.00 1.94669 >>>>> 1.00000 -0.00010 1.00000 >>>>> 104 5 40.0 1.00 8.00 46.00 1.94587 >>>>> 1.00000 -0.00010 1.00000 >>>>> 105 4 32.0 42.00 15.00 49.00 1.94354 >>>>> 1.00000 -0.00010 1.00000 >>>>> 106 4 32.0 4.00 41.00 54.00 1.93906 >>>>> 1.00000 -0.00010 1.00000 >>>>> 107 3 24.0 15.00 9.00 33.00 1.93848 >>>>> 1.00000 -0.00010 1.00000 >>>>> 108 6 48.0 61.00 28.00 72.00 1.92516 >>>>> 1.00000 -0.00010 1.00000 >>>>> 109 1 8.0 49.00 26.00 88.00 1.92457 >>>>> 1.00000 -0.00010 1.00000 >>>>> 110 3 24.0 65.00 37.00 41.00 1.92365 >>>>> 1.00000 -0.00010 1.00000 >>>>> 111 3 24.0 69.00 29.00 25.00 1.91576 >>>>> 1.00000 -0.00010 1.00000 >>>>> 112 2 16.0 70.00 15.00 9.00 1.89931 >>>>> 1.00000 -0.00010 1.00000 >>>>> 113 2 16.0 65.00 24.00 70.00 1.89719 >>>>> 1.00000 -0.00010 1.00000 >>>>> 114 1 8.0 41.00 24.00 36.00 1.89653 >>>>> 1.00000 -0.00010 1.00000 >>>>> 115 7 56.0 71.00 32.00 91.00 1.89529 >>>>> 1.00000 -0.00010 1.00000 >>>>> 116 6 48.0 24.00 38.00 69.00 1.88993 >>>>> 1.00000 -0.00010 1.00000 >>>>> 117 4 32.0 6.00 22.00 34.00 1.88833 >>>>> 1.00000 -0.00010 1.00000 >>>>> 118 3 24.0 41.00 45.00 51.00 1.87881 >>>>> 1.00000 -0.00010 1.00000 >>>>> 119 2 16.0 18.00 58.00 91.00 1.87841 >>>>> 1.00000 -0.00010 1.00000 >>>>> 120 3 24.0 44.00 10.00 17.00 1.87792 >>>>> 1.00000 -0.00010 1.00000 >>>>> 121 4 32.0 7.00 38.00 71.00 1.87444 >>>>> 1.00000 -0.00010 1.00000 >>>>> 122 2 16.0 39.00 12.00 65.00 1.87242 >>>>> 1.00000 -0.00010 1.00000 >>>>> 123 7 56.0 25.00 35.00 38.00 1.87054 >>>>> 1.00000 -0.00010 1.00000 >>>>> 124 3 24.0 14.00 28.00 25.00 1.86776 >>>>> 1.00000 -0.00010 1.00000 >>>>> 125 4 32.0 64.00 23.00 76.00 1.86629 >>>>> 1.00000 -0.00010 1.00000 >>>>> 126 7 56.0 58.00 44.00 43.00 1.86598 >>>>> 1.00000 -0.00010 1.00000 >>>>> 127 1 8.0 40.00 44.00 63.00 1.86487 >>>>> 1.00000 -0.00010 1.00000 >>>>> 128 1 8.0 19.00 8.00 55.00 1.84677 >>>>> 1.00000 -0.00010 1.00000 >>>>> 129 1 8.0 59.00 58.00 80.00 1.84162 >>>>> 1.00000 -0.00010 1.00000 >>>>> 130 1 8.0 16.00 40.00 92.00 1.83828 >>>>> 1.00000 -0.00010 1.00000 >>>>> 131 2 16.0 21.00 42.00 63.00 1.83258 >>>>> 1.00000 -0.00010 1.00000 >>>>> 132 6 48.0 2.00 19.00 69.00 1.82733 >>>>> 1.00000 -0.00010 1.00000 >>>>> 133 1 8.0 25.00 45.00 73.00 1.81604 >>>>> 1.00000 -0.00010 1.00000 >>>>> 134 1 8.0 6.00 10.00 48.00 1.81496 >>>>> 1.00000 -0.00010 1.00000 >>>>> 135 2 16.0 9.00 7.00 43.00 1.80712 >>>>> 1.00000 -0.00010 1.00000 >>>>> 136 1 8.0 36.00 2.00 53.00 1.80667 >>>>> 1.00000 -0.00010 1.00000 >>>>> 137 1 8.0 19.00 43.00 60.00 1.80358 >>>>> 1.00000 -0.00010 1.00000 >>>>> 138 1 8.0 24.00 0.00 25.00 1.80337 >>>>> 1.00000 -0.00010 1.00000 >>>>> 139 2 16.0 25.00 5.00 42.00 1.79990 >>>>> 1.00000 -0.00010 1.00000 >>>>> 140 4 32.0 69.00 18.00 40.00 1.79854 >>>>> 1.00000 -0.00010 1.00000 >>>>> 141 1 8.0 62.00 48.00 85.00 1.79309 >>>>> 1.00000 -0.00010 1.00000 >>>>> 142 4 32.0 61.00 43.00 84.00 1.78916 >>>>> 1.00000 -0.00010 1.00000 >>>>> 143 1 8.0 13.00 13.00 34.00 1.78877 >>>>> 1.00000 -0.00010 1.00000 >>>>> 144 1 8.0 34.00 28.00 78.00 1.78826 >>>>> 1.00000 -0.00010 1.00000 >>>>> 145 3 24.0 69.00 32.00 83.00 1.78152 >>>>> 1.00000 -0.00010 1.00000 >>>>> 146 1 8.0 14.00 11.00 33.00 1.78004 >>>>> 1.00000 -0.00010 1.00000 >>>>> 147 1 8.0 70.00 19.00 25.00 1.77961 >>>>> 1.00000 -0.00010 1.00000 >>>>> 148 1 8.0 24.00 1.00 50.00 1.77625 >>>>> 1.00000 -0.00010 1.00000 >>>>> 149 1 8.0 3.00 35.00 84.00 1.77073 >>>>> 1.00000 -0.00010 1.00000 >>>>> 150 1 8.0 22.00 43.00 64.00 1.77048 >>>>> 1.00000 -0.00010 1.00000 >>>>> 151 1 8.0 25.00 63.00 83.00 1.76957 >>>>> 1.00000 -0.00010 1.00000 >>>>> 152 1 8.0 52.00 57.00 72.00 1.76913 >>>>> 1.00000 -0.00010 1.00000 >>>>> 153 1 8.0 6.00 24.00 31.00 1.76905 >>>>> 1.00000 -0.00010 1.00000 >>>>> 154 1 8.0 7.00 37.00 72.00 1.76885 >>>>> 1.00000 -0.00010 1.00000 >>>>> 155 2 16.0 75.00 24.00 12.00 1.76788 >>>>> 1.00000 -0.00010 1.00000 >>>>> 156 1 8.0 64.00 38.00 42.00 1.76533 >>>>> 1.00000 -0.00010 1.00000 >>>>> 157 1 8.0 54.00 32.00 84.00 1.76446 >>>>> 1.00000 -0.00010 1.00000 >>>>> 158 1 8.0 23.00 38.00 88.00 1.76098 >>>>> 1.00000 -0.00010 1.00000 >>>>> 159 1 8.0 6.00 40.00 33.00 1.75765 >>>>> 1.00000 -0.00010 1.00000 >>>>> 160 1 8.0 22.00 25.00 9.00 1.75009 >>>>> 1.00000 -0.00010 1.00000 >>>>> 161 2 16.0 67.00 3.00 52.00 1.74760 >>>>> 1.00000 -0.00010 1.00000 >>>>> 162 2 16.0 28.00 67.00 70.00 1.74531 >>>>> 1.00000 -0.00010 1.00000 >>>>> 163 1 8.0 4.00 33.00 30.00 1.74303 >>>>> 1.00000 -0.00010 1.00000 >>>>> 164 1 8.0 69.00 20.00 74.00 1.74160 >>>>> 1.00000 -0.00010 1.00000 >>>>> 165 1 8.0 18.00 21.00 55.00 1.74153 >>>>> 1.00000 -0.00010 1.00000 >>>>> 166 2 16.0 31.00 25.00 80.00 1.73939 >>>>> 1.00000 -0.00010 1.00000 >>>>> 167 2 16.0 22.00 40.00 63.00 1.73425 >>>>> 1.00000 -0.00010 1.00000 >>>>> 168 2 16.0 68.00 21.00 74.00 1.72982 >>>>> 1.00000 -0.00010 1.00000 >>>>> 169 2 16.0 7.00 18.00 27.00 1.72964 >>>>> 1.00000 -0.00010 1.00000 >>>>> 170 1 8.0 11.00 29.00 60.00 1.72963 >>>>> 1.00000 -0.00010 1.00000 >>>>> 171 1 8.0 25.00 65.00 86.00 1.72933 >>>>> 1.00000 -0.00010 1.00000 >>>>> 172 1 8.0 40.00 10.00 56.00 1.72897 >>>>> 1.00000 -0.00010 1.00000 >>>>> 173 2 16.0 40.00 56.00 61.00 1.72244 >>>>> 1.00000 -0.00010 1.00000 >>>>> 174 1 8.0 17.00 67.00 74.00 1.72103 >>>>> 1.00000 -0.00010 1.00000 >>>>> 175 1 8.0 42.00 67.00 70.00 1.71913 >>>>> 1.00000 -0.00010 1.00000 >>>>> 176 1 8.0 25.00 64.00 85.00 1.71646 >>>>> 1.00000 -0.00010 1.00000 >>>>> 177 1 8.0 9.00 38.00 73.00 1.71532 >>>>> 1.00000 -0.00010 1.00000 >>>>> 178 1 8.0 4.00 34.00 31.00 1.71458 >>>>> 1.00000 -0.00010 1.00000 >>>>> 179 1 8.0 3.00 22.00 7.00 1.71416 >>>>> 1.00000 -0.00010 1.00000 >>>>> 180 1 8.0 31.00 50.00 89.00 1.71002 >>>>> 1.00000 -0.00010 1.00000 >>>>> 181 1 8.0 51.00 7.00 19.00 1.70870 >>>>> 1.00000 -0.00010 1.00000 >>>>> 182 1 8.0 43.00 1.00 48.00 1.70621 >>>>> 1.00000 -0.00010 1.00000 >>>>> 183 1 8.0 22.00 36.00 41.00 1.70538 >>>>> 1.00000 -0.00010 1.00000 >>>>> 184 1 8.0 1.00 22.00 71.00 1.70431 >>>>> 1.00000 -0.00010 1.00000 >>>>> 185 1 8.0 65.00 20.00 5.00 1.70426 >>>>> 1.00000 -0.00010 1.00000 >>>>> 186 1 8.0 70.00 10.00 43.00 1.70299 >>>>> 1.00000 -0.00010 1.00000 >>>>> 187 1 8.0 11.00 17.00 62.00 1.70210 >>>>> 1.00000 -0.00010 1.00000 >>>>> 188 1 8.0 1.00 21.00 70.00 1.70207 >>>>> 1.00000 -0.00010 1.00000 >>>>> 189 1 8.0 35.00 26.00 63.00 1.70166 >>>>> 1.00000 -0.00010 1.00000 >>>>> 190 1 8.0 11.00 37.00 66.00 1.70059 >>>>> 1.00000 -0.00010 1.00000 >>>>> 191 1 8.0 22.00 37.00 70.00 1.70035 >>>>> 1.00000 -0.00010 1.00000 >>>>> 192 1 8.0 25.00 14.00 22.00 1.69897 >>>>> 1.00000 -0.00010 1.00000 >>>>> >>>>> >>>>> Date: Tue, 25 Jun 2013 12:22:23 -0400 >>>>> From: Douglas N Greve <gr...@nmr.mgh.harvard.edu >>>>> <mailto:gr...@nmr.mgh.harvard.edu>> >>>>> Subject: Re: [Freesurfer] Monte Carlo simulation: Talairach >>>>> coordinates >>>>> To: freesurfer@nmr.mgh.harvard.edu >>>>> <mailto:freesurfer@nmr.mgh.harvard.edu> >>>>> Message-ID: <51c9c3bf.7000...@nmr.mgh.harvard.edu >>>>> <mailto:51c9c3bf.7000...@nmr.mgh.harvard.edu>> >>>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>>>> >>>>> can you send the file? >>>>> >>>>> On 06/25/2013 10:08 AM, Emily Boeke wrote: >>>>>> Hi All, >>>>>> >>>>>> I'm running Monte Carlo simulations on functional data, and the >>>>>> coordinate information outputted in the cluster.summary file isn't >>>>>> making sense. Usually the coordinates for the clusters listed are >>>>>> Talairach coordinates, but in the .summary files I'm getting, the >>>>>> coordinates are labeled "VoxX VoxY VoxZ" instead of "TalX TalY TalZ" >>>>>> and the numbers are clearly not Talairach coordinates. Above the >>>>>> table, it says "Reporting Coordinates in Voxel Indices." I also >>>>>> noted that in the descriptive information above the table, it says >>>>>> "Registration: None: Tal Coords invalid." >>>>>> >>>>>> However, the .nii files I'm seeing look like I would expect them too. >>>>>> >>>>>> I'm using the same command line I've run before, so I have no idea >>>>>> why the .summary file looks different. Does anyone know why this >>>>>> would be? >>>>>> >>>>>> Thanks, >>>>>> Emily >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
