You can use spmregister (front end for spm) or fsl_rigid_register (uses
fsl). Neither spm nor fsl will accept BRIKS, but I think the wrappers
will as they will convert the input to analyze using mri_convert. If
not, then you'll have to convert them youself.
You should also use tkregister2 to check the registrations (run with
--help :).
doug
Nate Parks wrote:
Hello,
I was wondering if anybody has any insight into the best way to coregister
functionals with anatomicals in Freesurfer. I am looking for an automated
method of coregistration. I noticed the spm_coregister command, but I am
working with AFNI BRIK files, and I assume this requires Analyze format. Any
suggestions?
Thanks.
Nate Parks
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Douglas N. Greve, Ph.D.
MGH-NMR Center
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Fax: 617-726-7422
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