> Does AFNI have an automated coregistration tool?
> I thought you could only do manual coreg in AFNI.
AFNI coregistration program is 3dvolreg.
See docs:
http://afni.nimh.nih.gov/pub/dist/doc/program_help/3dvolreg.html
And if you are having trouble finding which AFNI program does what, you might like my "all afni helps on one page":
http://www.grahamwideman.com/gw/brain/afni/alldocs_afni.htm
Graham
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