debian-med  

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• Processed: retitle 1008304 to ITP: libhttp-nio-java -- http/s file system provider for Java NIO.2 Debian Bug Tracking System
• Add autopkgtests to package Michael Ikwuegbu
  • Re: Add autopkgtests to package Nilesh Patra
  • Re: Add autopkgtests to package Michael Ikwuegbu
• Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2 Pierre Gruet
  • Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2 Guillem Jover
  • Bug#1008304: ITP: http-nio -- http/s file system provider for Java NIO.2 Pierre Gruet
  • Bug#1008304: marked as done (ITP: libhttp-nio-java -- http/s file system provider for Java NIO.2) Debian Bug Tracking System
• RFreview&upload: Another R time series tool - Mfuzz Steffen Möller
• q2-composition - removed vega* from source tree Steffen Möller
  • Re: q2-composition - removed vega* from source tree Nilesh Patra
• Request for peer review (and upload) of r-bioc-tmixclust and two dependencies Steffen Möller
• Bug#1008128: ITP: gatk-fermilite -- interface to call Heng Li's fermi-lite assembler from Java code Pierre Gruet
  • Bug#1008128: marked as done (ITP: gatk-fermilite -- interface to call Heng Li's fermi-lite assembler from Java code) Debian Bug Tracking System
• Help needed for dipy autopkgtest Andreas Tille
  • Re: Help needed for dipy autopkgtest Nilesh Patra
• ismrmrd has cmake build issue Andreas Tille
  • Re: ismrmrd has cmake build issue Mathieu Malaterre
  • Re: ismrmrd has cmake build issue Andreas Tille
  • Re: ismrmrd has cmake build issue Mathieu Malaterre
• Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree? Andreas Tille
  • Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree? Aaron M. Ucko
  • Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree? Andreas Tille
  • Re: ncbi-igblast - compiles so much redundant general NCBI bits - wrong source tree? Aaron M. Ucko
• git push -f on pixelmed Mathieu Malaterre
  • Re: git push -f on pixelmed Nilesh Patra
  • Re: git push -f on pixelmed Mathieu Malaterre
• Advice needed: building new gatk-bwamem-jni against another version of bwa Pierre Gruet
  • Re: Advice needed: building new gatk-bwamem-jni against another version of bwa Nilesh Patra
  • Re: Advice needed: building new gatk-bwamem-jni against another version of bwa Pierre Gruet
  • Re: Advice needed: building new gatk-bwamem-jni against another version of bwa Andrius Merkys
  • Re: Advice needed: building new gatk-bwamem-jni against another version of bwa Pierre Gruet
• Advice/Opinions regarding shovill Nilesh Patra
  • Re: Advice/Opinions regarding shovill Andreas Tille
• Bug#1006834: ITP: aeonbits-owner -- API to handle application configuration through Java properties file Pierre Gruet
  • Bug#1006834: marked as done (ITP: aeonbits-owner -- API to handle application configuration through Java properties file) Debian Bug Tracking System
• Bug#1006501: ITP: snpsift -- tool to annotate and manipulate genome variants Pierre Gruet
  • Bug#1006501: marked as done (ITP: snpsift -- tool to annotate and manipulate genome variants) Debian Bug Tracking System
• Don't understand: biomaj3-core is marked for autoremoval from testing olivier sallou
  • Re: Don't understand: biomaj3-core is marked for autoremoval from testing Nilesh Patra
  • Re: Don't understand: biomaj3-core is marked for autoremoval from testing olivier sallou
• Nanolyse autopkgtest broken - could someone provide a proper fastq file? Andreas Tille
  • Re: Nanolyse autopkgtest broken - could someone provide a proper fastq file? Andrius Merkys
  • Re: Nanolyse autopkgtest broken - could someone provide a proper fastq file? Andreas Tille
• libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian) Andreas Tille
  • Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian) Peter Pentchev
  • Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian) Andreas Tille
  • Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian) Andreas Tille
  • Re: libzstd should not be maintained by Debian Med team - could some core team please take over (Was: libzstd 1.5.2 in Debian) Peter Pentchev
• PIQUE Tony Travis
  • Re: PIQUE Andreas Tille
  • Re: PIQUE Lance Lin
  • Re: PIQUE Andreas Tille
  • Re: PIQUE Nilesh Patra
  • Re: PIQUE Andreas Tille
  • PIQUE Tony Travis
  • [Advent bug squashing] Re: PIQUE Andreas Tille
  • Re: [Advent bug squashing] Re: PIQUE Tony Travis
  • Re: [Advent bug squashing] Re: PIQUE Andreas Tille
  • Re: [Advent bug squashing] Re: PIQUE Tony Travis
  • Re: [Advent bug squashing] Re: PIQUE Tony Travis
  • Re: [Advent bug squashing] Re: PIQUE Tony Travis
• Autodocksuite not available at Sourceforge any more Andreas Tille
  • Re: Autodocksuite not available at Sourceforge any more Andrius Merkys
  • Re: Autodocksuite not available at Sourceforge any more Andreas Tille
• Cmake help needed for ncbi-vdb Andreas Tille
  • Re: Cmake help needed for ncbi-vdb Mathieu Malaterre
  • Re: Cmake help needed for ncbi-vdb Andreas Tille
  • Re: Cmake help needed for ncbi-vdb Aaron M. Ucko
  • Re: Cmake help needed for ncbi-vdb Mathieu Malaterre
  • Re: Cmake help needed for ncbi-vdb Andreas Tille
  • Re: Cmake help needed for ncbi-vdb Mathieu Malaterre
  • Please review ncbi-vdb (Was: Cmake help needed for ncbi-vdb) Andreas Tille
  • Re: Please review ncbi-vdb Aaron M. Ucko
  • Re: Please review ncbi-vdb Andreas Tille
  • Re: Please review ncbi-vdb Aaron M. Ucko
  • Re: Please review ncbi-vdb Andreas Tille
  • Re: Please review ncbi-vdb Aaron M. Ucko
• FastQTL seems to be removed from sourceforge - where can we find it now? Andreas Tille
• Can we remove probabel? Andreas Tille
  • Re: Can we remove probabel? L.C. Karssen
  • Re: Can we remove probabel? Andreas Tille
  • Re: Can we remove probabel? Lennart C. Karssen
• Is snakemake using drmaa? Andreas Tille
  • Re: Is snakemake using drmaa? Rebecca N. Palmer
  • Re: Is snakemake using drmaa? Andreas Tille
  • Re: Is snakemake using drmaa? Rebecca N. Palmer
• Datasets to design autopkgtests for our packages Pierre Gruet
  • Re: Datasets to design autopkgtests for our packages Andrius Merkys
  • Re: Datasets to design autopkgtests for our packages Pierre Gruet
  • Re: Datasets to design autopkgtests for our packages Aaron M. Ucko
• NearVANA license Tony Travis
  • NearVANA license Tony Travis
  • Re: NearVANA license Tony Travis
• q2-emperor - flagged as "RFS"ed Steffen Möller
  • Re: q2-emperor - flagged as "RFS"ed Nilesh Patra
  • Re: q2-emperor - flagged as "RFS"ed Steffen Möller
• Re: Bug#997120: [Debian-med-packaging] Bug#997120: Emmanuel Promayon
  • Re: CamiTK build failed on amd64 and all Emmanuel Promayon
  • Re: CamiTK build failed on amd64 and all Andreas Tille
  • Re: CamiTK build failed on amd64 and all Emmanuel Promayon
• Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data Pierre Gruet
  • Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data Andreas Tille
  • Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data Pierre Gruet
  • Bug#1005356: ITP: rockhopper -- system for analyzing bacterial RNA-seq data Andreas Tille
  • Bug#1005356: marked as done (ITP: rockhopper -- system for analyzing bacterial RNA-seq data) Debian Bug Tracking System
• Debian Med sprint from 2022-02-18 to 2021-02-20 Andreas Tille
  • Re: Debian Med sprint from 2022-02-18 to 2021-02-20 Tony Travis
  • Re: Debian Med sprint from 2022-02-18 to 2021-02-20 Nilesh Patra
  • Re: Debian Med sprint from 2022-02-18 to 2021-02-20 Tony Travis
  • Re: Debian Med sprint from 2022-02-18 to 2021-02-20 Lance Lin
• Re: Bug#997120: Andreas Tille
  • Re: Bug#997120: Emmanuel . Promayon
  • packaging new upstream camitk version (was: Bug#997120:) Emmanuel Promayon
  • Re: packaging new upstream camitk version (was: Bug#997120:) Andreas Tille
  • Re: packaging new upstream camitk version (was: Bug#997120:) Emmanuel Promayon
• does anyone know of its whereabouts? Fwd: r-bioc-progeny_1.14.0+ds-1_amd64.changes REJECTED Steffen Möller
• Rationale for removing binary data from debian source package Mathieu Malaterre
  • Re: Rationale for removing binary data from debian source package Andreas Tille
• RFS: splitting the snakemake package into main and -doc Rebecca N. Palmer
• Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Thomas Koch
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Nilesh Patra
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Nilesh Patra
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Nilesh Patra
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Nilesh Patra
  • Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Andreas Tille
  • Re: Re: Bug#1004498: RFP: toml11 -- C++11 (or later) header-only toml parser/encoder Lance Lin
• Java help for king needed Andreas Tille
  • Re: Java help for king needed Nilesh Patra
  • Re: Java help for king needed Andreas Tille
  • Re: Java help for king needed pgtdebian
  • Re: Java help for king needed Andreas Tille
  • Re: Java help for king needed Pierre Gruet
  • Re: Java help for king needed Andreas Tille
  • Re: Java help for king needed Pierre Gruet
  • Re: Java help for king needed Andreas Tille
  • Re: Java help for king needed Pierre Gruet
  • Re: Java help for king needed Andreas Tille
• Test issue with new version of mothur Andreas Tille
• Porting pftools to pcre2 Nilesh Patra
  • Re: [help #218346] Porting pftools to pcre2 Nilesh Patra
  • Re: [help #218346] Porting pftools to pcre2 Nilesh Patra
  • Re: [help #218346] Porting pftools to pcre2 Nilesh Patra
  • Re: [help #218346] Porting pftools to pcre2 Nilesh Patra
• [Request for review] plast Nilesh Patra
  • Re: [Request for review] plast Andreas Tille
  • Re: [Request for review] plast Nilesh Patra
• 20 years of Debian Med list :-) and suggested sprint date Andreas Tille
  • Re: 20 years of Debian Med list :-) and suggested sprint date Nilesh Patra
  • Re: 20 years of Debian Med list :-) and suggested sprint date Andreas Tille
  • Re: 20 years of Debian Med list :-) and suggested sprint date Étienne Mollier
  • Re: 20 years of Debian Med list :-) and suggested sprint date Étienne Mollier
  • Re: 20 years of Debian Med list :-) and suggested sprint date Pierre Gruet
  • Re: 20 years of Debian Med list :-) and suggested sprint date Sascha Steinbiss
  • Please participate in Debian Med sprint (Was: 20 years of Debian Med list :-) and suggested sprint date) Andreas Tille
• Re: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED Pierre Gruet
  • Re: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED Andreas Tille
  • Re: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED Pierre Gruet
  • New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED) Andreas Tille
  • Re: New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED) Pierre Gruet
  • Re: New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED) Andreas Tille
  • Re: New version of snpeff in Git (Was: snpeff_4.3t+dfsg1-1_amd64.changes REJECTED) Pierre Gruet
• Segmentation fault in autopkgtest of new version of spaln Andreas Tille
  • Re: Segmentation fault in autopkgtest of new version of spaln Andreas Tille
• [Help] librostlab-blast fails its autopkgtest with C++ issue Andreas Tille
  • Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Aaron M. Ucko
  • Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Andreas Tille
  • Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Aaron M. Ucko
  • Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Andreas Tille
  • Re: [Help] librostlab-blast fails its autopkgtest with C++ issue Aaron M. Ucko
• Bug#1004152: ITP: malt -- sequence alignment and analysis tool to process sequencing data Pierre Gruet
  • Re: Bug#1004152: ITP: malt -- sequence alignment and analysis tool to process sequencing data Andreas Tille
  • Bug#1004152: marked as done (ITP: malt -- sequence alignment and analysis tool to process sequencing data) Debian Bug Tracking System
• New version of muscle contains asm statements which prevent building on non-Intel architectures Andreas Tille
  • Re: New version of muscle contains asm statements which prevent building on non-Intel architectures Mathieu Malaterre
  • Re: New version of muscle contains asm statements which prevent building on non-Intel architectures Andreas Tille
• Snap-aligner: Autopkgtest does not reproduce results from version 1.0.0 Andreas Tille
• sambamba and freebayes new releases Pjotr Prins
  • Re: sambamba and freebayes new releases Andreas Tille
  • Re: sambamba and freebayes new releases Steffen Möller
  • Re: sambamba and freebayes new releases Andreas Tille
  • vcflib new release Pjotr Prins
  • I always forget how to fix 'cannot find -lpthreads' (Was: vcflib new release) Andreas Tille
  • Re: I always forget how to fix 'cannot find -lpthreads' (Was: vcflib new release) Nilesh Patra
• [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Andreas Tille
  • Re: [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Aaron M. Ucko
  • Re: [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Andreas Tille
  • Re: [Help] Any idea how to patch cmake code of terraphast properly to get shared libraries Aaron M. Ucko

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