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• Any idea how to fix this C++ code in diann Andreas Tille
  • Re: Any idea how to fix this C++ code in diann Aaron M. Ucko
  • Re: Any idea how to fix this C++ code in diann Nilesh Patra
  • Re: Any idea how to fix this C++ code in diann Andreas Tille
• New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andreas Tille
  • Re: New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andrius Merkys
  • Re: New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andreas Tille
  • Re: New version of muscle with changed options compared to previous versions [muscle_5.1-1_source.changes ACCEPTED into unstable] Andrius Merkys
• Updating camitk Andreas Tille
  • Re: Updating camitk Andreas Tille
• [Help] intake faile dh_auto_test Andreas Tille
  • Re: [Help] intake faile dh_auto_test Étienne Mollier
  • Re: [Help] intake faile dh_auto_test Andreas Tille
• [Help] Autopkgtest of idseq-bench Andreas Tille
  • Re: [Help] Autopkgtest of idseq-bench Nilesh Patra
• Any idea how to deal with multiple definitions in new version of genometester? Andreas Tille
  • Re: Any idea how to deal with multiple definitions in new version of genometester? Aaron M. Ucko
  • Re: Any idea how to deal with multiple definitions in new version of genometester? Andreas Tille
  • Re: Any idea how to deal with multiple definitions in new version of genometester? Aaron M. Ucko
• libcifpp transition Andrius Merkys
  • Re: libcifpp transition Andrius Merkys
  • Re: libcifpp transition Andrius Merkys
  • Re: libcifpp transition Nilesh Patra
  • Re: libcifpp transition Nilesh Patra
  • Re: libcifpp transition Andrius Merkys
  • Re: libcifpp transition Andrius Merkys
  • Re: libcifpp transition Aaron M. Ucko
• Bug#1003782: ITP: megan-ce -- interactive tool to explore and analyse microbiome sequencing data Pierre Gruet
  • Bug#1003782: marked as done (ITP: megan-ce -- interactive tool to explore and analyse microbiome sequencing data) Debian Bug Tracking System
• Help needed to build plastimatch Andreas Tille
  • Re: Help needed to build plastimatch Mathieu Malaterre
  • Re: Help needed to build plastimatch Andreas Tille
  • Re: Help needed to build plastimatch Nilesh Patra
  • Re: Help needed to build plastimatch Nilesh Patra
• Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low Sébastien Jodogne
  • Re: Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low Aaron M. Ucko
  • Re: Fwd: [Debian-med-packaging] Bug#1003314: orthanc package: startlimitburst too low Sébastien Jodogne
• Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Nilesh Patra
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Flavien Bridault
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Nilesh Patra
  • routine-update adds debhelpe (Was: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]) Andreas Tille
  • Re: routine-update adds debhelpe (Was: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]) Nilesh Patra
  • Re: routine-update adds debhelpe (Was: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing]) Andreas Tille
  • Re: Sight needs to be ported to insighttoolkit5 [Fwd: sight is marked for autoremoval from testing] Andreas Tille
• salsa CI job fails during "uploading artifacts" Steven Robbins
  • Re: salsa CI job fails during "uploading artifacts" Nilesh Patra
  • Re: salsa CI job fails during "uploading artifacts" Steven Robbins
  • Re: salsa CI job fails during "uploading artifacts" Nilesh Patra
• Re: [Bug 1956094] Re: deborphan guess-work removes too many files Tony Travis
  • Re: [Bug 1956094] Re: deborphan guess-work removes too many files Andreas Tille
  • Re: [Bug 1956094] Re: deborphan guess-work removes too many files Tony Travis
  • Re: [Bug 1956094] Re: deborphan guess-work removes too many files Andreas Tille
• damapper update - elf issue Shayan Doust
  • Re: damapper update - elf issue Nilesh Patra
• RFS: andi and phylonium Fabian Klötzl
  • Re: RFS: andi and phylonium Andreas Tille
  • Re: RFS: andi and phylonium Nilesh Patra
  • Re: RFS: andi and phylonium Fabian Klötzl
• [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
  • Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Nilesh Patra
  • Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
  • Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
  • Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Nilesh Patra
  • Re: [Fwd: Bug#1001916: src:bart-view: fails to migrate to testing for too long: FTBFS on armel and s390x] Martin Uecker
• Please upload htcondor to take over maintenance of Debian HPC Team (Was: Moving htcondor to Debian Med and trying to upgrade) Andreas Tille
  • Re: Please upload htcondor to take over maintenance of Debian HPC Team (Was: Moving htcondor to Debian Med and trying to upgrade) Andreas Tille
• Re: Identity Theft rhkramer
• [Advent bug squashing] Bug#989014: marked as done (vcflib: executables in scripts/* are not packaged) Andreas Tille
  • Re: [Advent bug squashing] Bug#989014: marked as done (vcflib: executables in scripts/* are not packaged) Nilesh Patra
• [karsten.hilb...@gmx.net: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
  • Re: [karsten.hilb...@gmx.net: Re: Acquiring Dental RVG on Linux] Mayuresh
  • Re: [karsten.hilb...@gmx.net: Re: Acquiring Dental RVG on Linux] rhkramer
  • Aw: Re: [karsten.hilb...@gmx.net: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
  • Aw: Re: [karsten.hilb...@gmx.net: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
  • Aw: Re: [karsten.hilb...@gmx.net: Re: Acquiring Dental RVG on Linux] Karsten Hilbert
• [Advent bug squashing] Bug#919052: marked as done (python-pbcore: some docs for pbcore are not found) Andreas Tille
• [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Andreas Tille
  • Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Pierre Gruet
  • Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Andreas Tille
  • Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)] Pierre Gruet
• [Advent bug squashing] Re: FTBFS: error: package org.testng does not exist Andreas Tille
• Re: python-pbcore: some docs for pbcore are not found Andreas Tille
  • Re: python-pbcore: some docs for pbcore are not found Nilesh Patra
• [Advent bug squashing] Thanks to Olivier Sallou: Bug#982036: marked as done (emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal)] Andreas Tille
• Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andreas Tille
  • Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andrius Merkys
  • Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andreas Tille
  • Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Andrius Merkys
  • Re: Somehow some dh_auto_test of Python3 packages insist to install wheel via pip Nilesh Patra
• [Advent bug squashing] Bug#1002365: marked as done (pynn: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.10 3.9" returned exit code 13) Étienne Mollier
• Re: libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist Pierre Gruet
  • Re: libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist Andreas Tille
• [Advent bug squashing] Thanks to Nilesh Patra: Bug#1002355: marked as done (hdmf: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" returned exit code 13)] Andreas Tille
• [Advent bug squashing] Thanks again to Julien Lamy: Bug#1002203: marked as done (mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity)] Andreas Tille
• RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Steffen Möller
  • Re: RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Andreas Tille
  • Re: RF peer review: r-other-ibi-disgenet2r freshly injected into salsa Steffen Möller
• [Advent bug squashing] Thanks to Julien Lamy: Bug#1002134: odil: FTBFS: Value.cpp:269:69: error: wrong number of template arguments (4, should be at least 5) Andreas Tille
• [Advent bug squashing] Bug#1002236: marked as done (conda-package-handling: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit code 13)] Andreas Tille
• [Advent bug squashing] Bug#1002230: marked as done (Ocaml build error: expression was expected of type) Andreas Tille
• [Advent bug squashing] Bug#1002217: marked as done (gatb-core: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below)] Andreas Tille
• [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Andreas Tille
  • Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Julien Lamy
  • Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Andreas Tille
  • Re: [lu...@debian.org: Bug#1002203: mrtrix3: FTBFS: ./core/types.h:326:49: error: ‘using Vector3 = class Eigen::Matrix<double, 3, 1>’ redeclared as different kind of entity] Nilesh Patra
• [Advent bug squashing] Bug#1002253: marked as done Andreas Tille
• Help with possibly broken ar archive (Was: Bug#1002253: libatomic-queue: FTBFS: dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below) Andreas Tille
  • Re: Help with possibly broken ar archive Aaron M. Ucko
  • Re: Help with possibly broken ar archive Andreas Tille
• [Advent bug squashing] By Lance Lin: Bug#986201: marked as done (fsm-lite: Please provide autopkgtest) Andreas Tille
• RFS: r-cran-sparql - dependency for a more typical Med package Steffen Möller
  • Re: RFS: r-cran-sparql - dependency for a more typical Med package Andreas Tille
• autopkgtest requiring large data sets (pique, hinge) Lance Lin
  • Re: autopkgtest requiring large data sets (pique, hinge) Pierre Gruet
  • Re: autopkgtest requiring large data sets (pique, hinge) Nilesh Patra
  • Re: autopkgtest requiring large data sets (pique, hinge) Steven Robbins
  • Re: autopkgtest requiring large data sets (pique, hinge) Tony Travis
  • Re: autopkgtest requiring large data sets (pique, hinge) Tony Travis
  • Re: Re: autopkgtest requiring large data sets (pique, hinge) Lance Lin
  • Re: Re: autopkgtest requiring large data sets (pique, hinge) Nilesh Patra
• [Advent bug squashing] Bug#995831: marked as done (find_package(charls 2.2.0 REQUIRED) not working) Andreas Tille
• Acquiring Dental RVG on Linux Mayuresh
  • Re: Acquiring Dental RVG on Linux Andreas Tille
  • Re: Acquiring Dental RVG on Linux Mayuresh
  • Re: Acquiring Dental RVG on Linux Karsten Hilbert
  • Re: Acquiring Dental RVG on Linux Jakub Wilk
  • Re: Acquiring Dental RVG on Linux Karsten Hilbert
  • Re: Acquiring Dental RVG on Linux Mayuresh
  • Re: Acquiring Dental RVG on Linux Mayuresh
  • Aw: Re: Acquiring Dental RVG on Linux Karsten Hilbert
  • Re: Acquiring Dental RVG on Linux Mayuresh
  • Re: Acquiring Dental RVG on Linux Mayuresh
  • Re: Acquiring Dental RVG on Linux Karsten Hilbert
  • Re: Acquiring Dental RVG on Linux Leonardo M . Ramé
  • Re: Acquiring Dental RVG on Linux Mayuresh
  • Re: Acquiring Dental RVG on Linux Leonardo M . Ramé
  • Re: Acquiring Dental RVG on Linux Leonardo M . Ramé
  • Re: Acquiring Dental RVG on Linux Karsten Hilbert
  • Re: Acquiring Dental RVG on Linux Sébastien Jodogne
  • Re: Acquiring Dental RVG on Linux Leonardo M . Ramé
• [Advent bug squashing] 982383 Done: Confusing patch description Andreas Tille
• [Advent bug squashing] Bug#994286: marked as done (r-bioc-destiny: Orphaned upstream, marked for removal in next BioConductor release) Andreas Tille
• [Help needed] Racon Nilesh Patra
  • Re: [Help needed] Racon Andreas Tille
  • Re: [Help needed] Racon tony mancill
  • Re: [Help needed] Racon Nilesh Patra
  • Re: [Help needed] Racon Nilesh Patra
  • Re: [Help needed] Racon tony mancill
  • Re: [Help needed] Racon tony mancill
  • Re: [Help needed] Racon Nilesh Patra
  • Re: [Help needed] Racon tony mancill
  • Re: [Help needed] Racon Andreas Tille
• [Advent bug squashing] Bug#1001932: marked as done (smart-open: FTBFS with dpkg-buildpackage -nc/--no-pre-clean) Nilesh Patra
• [Advent bug squashing] Bug#1000224: marked as done (plastimatch: DCMTK was configured to use C++14 features, but your compiler does not or was not configured to provide them.)] Andreas Tille
• Moving python-bioblend to med-team? Nilesh Patra
  • Re: Moving python-bioblend to med-team? Andreas Tille
  • Re: Moving python-bioblend to med-team? Steffen Möller
• [Advent bug squashing] Bug#1001657: marked as done (ball: binary-any FTBFS) Andreas Tille
• [Advent bug squashing] Bug#977033: marked as done (parallel: Multiple threads on multiple hosts with same home directory fails) Andreas Tille
• [Advent bug squashing] Bug#1001614: marked as done (odil: FTBFS on armhf: 91 - MoveSCU_Move (Failed)) Andreas Tille
• [Advent bug squashing] Bug#987287: marked as done (python-bz2file: no longer useful since Python 3.3) Andreas Tille
• [Advent bug squashing] Fwd: Bug#1001681: marked as done (sight: FTBFS in unstable) Pierre Gruet
• [Advent bug squashing] Bug#929700: marked as done (pymol: Deprecation warning during startup) Andreas Tille
• [Advent bug squashing] Bug#935340: marked as done (obitools: Port to Python3 needed) Andreas Tille
• Re: [Advent bug squashing] Bug#988852: marked as done (transdecoder: broken symlink: /usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz -> ../../sample_data/pasa_example/pasa_assemblies.fasta.gz) Andreas Tille
• [Advent bug squashing]: Bug#985071: marked as done (smalt: native FTBFS with DEB_BUILD_OPTIONS=nocheck) Andreas Tille
• Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andreas Tille
  • Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andrius Merkys
  • Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal olivier sallou
  • Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Peter Rice
  • Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal olivier sallou
  • Re: emboss: FTBFS with OpenJDK 17 due to com.sun.net.ssl removal Andreas Tille
• [Advent bug squashing] Bug#995409: marked as done (ball: Please build depend on qtwebengine5-dev also on mips64el) Andreas Tille
• [Advent bug squashing] Bug#982365: marked as done (ball: reduce Build-Depends) Andreas Tille
  • Re: [Advent bug squashing] Bug#982365: marked as done (ball: reduce Build-Depends) Nilesh Patra
• [Advent bug squashing] Bug#1001535: marked as done (busco: (autopkgtest) needs update for python3.10) Nilesh Patra
• [Advent bug squashing] Close bugs that were not closed in changelogs Andreas Tille
• How to do 32-bit build in AMD64 chroot -- problem with SSE instructions? Steven Robbins
  • Re: How to do 32-bit build in AMD64 chroot -- problem with SSE instructions? Andreas Tille
• [Advent bug squashing]: Bug#999632: marked as done (r-bioc-isoformswitchanalyzer FTBFS: ERROR: dependencies ‘DRIMSeq’, ‘tximeta’ are not available) Nilesh Patra
• [Advent bug squashing]: Bug#986555: marked as done (mark one more symbol as optional) Andreas Tille
• [Advent bug squashing] Bug#1001520: marked as done (fastp: FTBFS on riscv64, linked with -lpthread instead of -pthread) Andreas Tille
• [Advent bug squashing] Bug#1001349: marked as done (python-anndata: autopkgtest fail with pandas 1.3: missing openpyxl) Andreas Tille
• [Advent bug squashing] Bug#1001020: marked as done (python-anndata: FTBFS with sklearn 1.0.1-1: ModuleNotFoundError: No module named 'sklearn.utils.testing') Andreas Tille
• [Advent bug squashing] Bug#1001410: marked as done (python-csb: (autopkgtest) needs update for python3.10: TypeError: multiple bases have instance lay-out conflict) Nilesh Patra
• please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Steffen Möller
  • Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Nilesh Patra
  • Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Andreas Tille
  • Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with Steffen Möller

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