I’m also having issues with my bridges. It seems that they always “die" after the initial sync (which for me is always a Git win). After awhile when I commit again to GitHub, nothing happens on the SVN, and I end up deleting the bridges and re-creating them. This always does the trick, but when I commit the next time, it’s the same thing again.
I thought the problem was maybe with the webhook, so I went to double check it. I noticed that GitHub has probably updated these settings, since in the bridge documentation it says: > Leave "Payload version" alone (it should be "application/vnd.github-v3+form") But it looks like nowadays the setting is called “Content type” and options are “application/json” and “application/x-www-form-urlencoded” (which I have selected). Otherwise everything looks to be ok (“Just the push event”, “Active”, and the new option “Secret” is empty), and under “Recent Deliveries” I do see that the hook has indeed been triggered by my commits. So, I guess there must be something wrong with the bridge itself. Both my repositories (QDNAseq and QDNAseq-release) are organization ones, if that makes a difference. I don’t really know what else I could do to debug this. Maybe there could be some kind of logging that was visible to the bridge owners. Ilari On 22.5.2014, at 3.59, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > > > ----- Original Message ----- >> From: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> >> To: "Dan Tenenbaum" <dtene...@fhcrc.org> >> Cc: bioc-devel@r-project.org, "Sean Davis" <sdav...@mail.nih.gov>, "Hector >> Corrada Bravo" <hcorr...@gmail.com> >> Sent: Wednesday, May 21, 2014 6:15:50 PM >> Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is available >> >> >> All it says is >> >> "An error occurred creating the git-svn bridge." >> >> >> Safari 7.0.3 on OS X Mavericks >> >> >> >> >> I know nothing about debugging html / javascript stuff, but there is >> nothing reported in the "error console" in Safari. >> >> >> This is for re-creating a bridge that used to exist: minfi. >> >> > > The issue has been fixed and your bridge has been created. Thanks for the > report. > Dan > > >> Best, >> Kasper >> >> >> >> On Wed, May 21, 2014 at 9:08 PM, Dan Tenenbaum < dtene...@fhcrc.org > >> wrote: >> >> >> Hi Kasper, >> >> >> ----- Original Message ----- >>> From: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com > >> >>> To: "Hector Corrada Bravo" < hcorr...@gmail.com > >>> Cc: "Dan Tenenbaum" < dtene...@fhcrc.org >, >>> bioc-devel@r-project.org , "Sean Davis" < sdav...@mail.nih.gov > >>> Sent: Wednesday, May 21, 2014 4:50:59 PM >>> Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is available >>> >>> >> >>> I am trying to re-create my git-svn bridges, but the website throws >>> an error when I do it. Not sure why. I am trying to let svn win. >>> >> >> What is the error? >> >> Also, what is your OS (+ version + distro) and browser ( + version)? >> I have a report that there are are problems creating bridges on >> Linux using firefox and chrome but that it worked for this user with >> firefox on windows (and for me on Mac with several browsers). I'll >> do some testing. >> >> >> If there is a javascript console available, can you see if there is >> an error there? If not, no worries, just let me know what config >> you're using. >> >> Dan >> >> >> >> >>> >>> Best, >>> Kasper >>> >>> >>> >>> On Mon, May 12, 2014 at 1:41 PM, Hector Corrada Bravo < >>> hcorr...@gmail.com > wrote: >>> >>> >>> Another use case where this is useful is that newer packages may >>> still need >>> to use the 'devel' BioC branch as something of a 'release' branch >>> since a >>> natural release cycle is faster than the BioC cycle (I think of the >>> BioC >>> devel branch that way for some packages). >>> >>> This way the master branch on git can be the 'no guarantees' >>> branch, >>> and >>> another branch on git is synchronized with the devel branch on svn. >>> >>> >>> >>> >>> On Mon, May 12, 2014 at 1:26 PM, Dan Tenenbaum < dtene...@fhcrc.org >>>> >>> wrote: >>> >>>> >>>> >>>> ----- Original Message ----- >>>>> From: "Henrik Bengtsson" < h...@biostat.ucsf.edu > >>>>> To: "Moritz Gerstung" < m...@sanger.ac.uk > >> >> >>>>> Cc: bioc-devel@r-project.org , "Sean Davis" < >>>>> sdav...@mail.nih.gov > >>>>> Sent: Monday, May 12, 2014 10:19:15 AM >>>>> Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is >>>>> available >>>>> >>>>> On Mon, May 12, 2014 at 1:32 AM, Moritz Gerstung < >>>>> m...@sanger.ac.uk > >>>>> wrote: >>>>>> Hi all >>>>>> >>>>>> Following Kasper's idea from a couple of months ago: Would it >>>>>> be >>>>>> possible to have the git-svn bridge synchronise a branch >>>>>> other >>>>>> than master? >>>>>> >>>>>> If so, one could use the git subtree command, >>>>>> >>>>>> git subtree split -P minfi -b biocsvn >>>>>> >>>>>> to create a branch 'biocsvn' only containing minfi directory >>>>>> [package]. This branch would then be synchronised over the >>>>>> git-svn >>>>>> bridge. Changes in the biocsvn branch can be merged back into >>>>>> the >>>>>> master branch and the correct directory with >>>>>> >>>>>> git subtree merge -P minfi biocsvn >>>>>> >>>>>> I would also fancy a directory structure as Kasper suggested, >>>>>> where >>>>>> the actual R package is a subdirectory. This would allow for >>>>>> placing extra files such as README.md or Makefile into the >>>>>> root >>>>>> directory and other project related data which shouldn't go >>>>>> into >>>>>> the package, but may be useful, in other directories. As a >>>>>> side >>>>>> effect one can also screw up the git master branch without >>>>>> breaking the devel repository. >>>>> >>>>> Just a FYI: Using .Rbuildignore you can still add Makefile and >>>>> other >>>>> files to the repository that won't go into the package >>>>> build/install/check/distro/.... This works regardless of >>>>> Subversion >>>>> of Git. >>>>> >>>> >>>> >>>> Right. But if you wanted to structure your repo like this: >>>> >>>> - README >>>> - package/ >>>> DESCRIPTION >>>> etc >>>> - otherstuff/ >>>> >>>> where the actual R package is in the 'package' directory, then >>>> .Rbuildignore would not help. >>>> >>>> This (I think) is what the original request was about. >>>> >>>> Dan >>>> >>>> >>>> >>>>> /Henrik >>>>> >>>>> >>>>>> >>>>>> I'm not a git guru, so maybe I'm missing something here, but >>>>>> it >>>>>> seems feasible. >>>>>> >>>>>> Cheers, >>>>>> >>>>>> Moritz >>>>>> >>>>>> PS. Resent as it bounced from list before. >>>>>> >>>>>> >>>>>> On 21 Feb 2014, at 17:00, Kasper Daniel Hansen >>>>>> < kasperdanielhan...@gmail.com > wrote: >>>>>> >>>>>>> Thanks everyone, it was worth a question. >>>>>>> >>>>>>> Perhaps I will figure out how to use submodules. >>>>>>> >>>>>>> Kasper >>>>>>> >>>>>>> >>>>>>> On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum >>>>>>> < dtene...@fhcrc.org > wrote: >>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> ----- Original Message ----- >>>>>>>>> From: "Sean Davis" < sdav...@mail.nih.gov > >>>>>>>>> To: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com >>>>>>>>>> >> >> >>>>>>>>> Cc: bioc-devel@r-project.org , "Dan Tenenbaum" >>>>>>>>> < dtene...@fhcrc.org > >>>>>>>>> Sent: Friday, February 21, 2014 7:08:21 AM >>>>>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge >>>>>>>>> is >>>>>>>>> available >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> I doubt this is possible given the atomic nature of a git >>>>>>>>> repository. >>>>>>>>> You might look at using a second git repository and >>>>>>>>> including >>>>>>>>> the >>>>>>>>> minfi package as a git submodule of that second >>>>>>>>> repository. >>>>>>>>> Then, >>>>>>>>> you can keep things in sync, but the minfi repository >>>>>>>>> remains >>>>>>>>> atomic. >>>>>>>>> >>>>>>>> >>>>>>>> I think Sean is correct. >>>>>>>> Dan >>>>>>>> >>>>>>>> >>>>>>>>> Sean >>>>>>>>> On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" < >>>>>>>>> kasperdanielhan...@gmail.com > wrote: >>>>>>>>> >>>>>>>>> >>>>>>>>> Question: is it possible to synchronize a subset of a >>>>>>>>> github >>>>>>>>> repos? >>>>>>>>> For >>>>>>>>> minfi, I would like my github to be >>>>>>>>> >>>>>>>>> minfi-devel >>>>>>>>> /minfi >>>>>>>>> OTHER SCRIPTS >>>>>>>>> >>>>>>>>> where OTHER SCRIPTS could be notes or test scripts I use >>>>>>>>> for >>>>>>>>> internal >>>>>>>>> development. I then only want to synchronize the >>>>>>>>> minfi-devel/minfi >>>>>>>>> directory with Bioc. >>>>>>>>> >>>>>>>>> Kasper >>>>>>>>> >>>>>>>>> >>>>>>>>> On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen < >>>>>>>>> kasperdanielhan...@gmail.com > wrote: >>>>>>>>> >>>>>>>>>> Seems to work for me; I have now populated my github >>>>>>>>>> repo. >>>>>>>>>> >>>>>>>>>> Thanks for the help, >>>>>>>>>> Kasper >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum < >>>>>>>>>> dtene...@fhcrc.org >>>>>>>>>>> wrote: >>>>>>>>>> >>>>>>>>>>> This should be fixed now. >>>>>>>>>>> Thanks. >>>>>>>>>>> Dan >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> ----- Original Message ----- >>>>>>>>>>>> From: "Kasper Daniel Hansen" < >>>>>>>>>>>> kasperdanielhan...@gmail.com > >>>>>>>>>>>> To: "Dan Tenenbaum" < dtene...@fhcrc.org > >>>>>>>>>>>> Cc: bioc-devel@r-project.org >>>>>>>>>>>> Sent: Saturday, February 8, 2014 7:07:44 PM >>>>>>>>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn >>>>>>>>>>>> bridge is >>>>>>>>>>>> available >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> Yes, see screenshot >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> (I do know I have a whitespace in front of the github >>>>>>>>>>>> url >>>>>>>>>>>> and >>>>>>>>>>>> I >>>>>>>>>>>> get a >>>>>>>>>>>> note and I fixed it. >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> Kasper >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum < >>>>>>>>>>>> dtene...@fhcrc.org > >>>>>>>>>>>> wrote: >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> https://github.com/kasperdanielhansen/minfi >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> [[alternative HTML version deleted]] >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Bioc-devel@r-project.org mailing list >>>>>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>>>>>>> >>>>>>>> >>>>>>> >>>>>>> [[alternative HTML version deleted]] >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Bioc-devel@r-project.org mailing list >>>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> The Wellcome Trust Sanger Institute is operated by Genome >>>>>> Research >>>>>> Limited, a charity registered in England with number 1021457 >>>>>> and a >>>>>> company registered in England with number 2742969, whose >>>>>> registered >>>>>> office is 215 Euston Road, London, NW1 2BE. >>>>>> >>>>>> _______________________________________________ >>>>>> Bioc-devel@r-project.org mailing list >>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>>> >>>>> _______________________________________________ >>>>> Bioc-devel@r-project.org mailing list >>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>>> >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>> >>> >> >> > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
