----- Original Message -----
> From: "Henrik Bengtsson" <h...@biostat.ucsf.edu>
> To: "Moritz Gerstung" <m...@sanger.ac.uk>
> Cc: bioc-devel@r-project.org, "Sean Davis" <sdav...@mail.nih.gov>
> Sent: Monday, May 12, 2014 10:19:15 AM
> Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is available
>
> On Mon, May 12, 2014 at 1:32 AM, Moritz Gerstung <m...@sanger.ac.uk>
> wrote:
> > Hi all
> >
> > Following Kasper's idea from a couple of months ago: Would it be
> > possible to have the git-svn bridge synchronise a branch other
> > than master?
> >
> > If so, one could use the git subtree command,
> >
> > git subtree split -P minfi -b biocsvn
> >
> > to create a branch 'biocsvn' only containing minfi directory
> > [package]. This branch would then be synchronised over the git-svn
> > bridge. Changes in the biocsvn branch can be merged back into the
> > master branch and the correct directory with
> >
> > git subtree merge -P minfi biocsvn
> >
> > I would also fancy a directory structure as Kasper suggested, where
> > the actual R package is a subdirectory. This would allow for
> > placing extra files such as README.md or Makefile into the root
> > directory and other project related data which shouldn't go into
> > the package, but may be useful, in other directories. As a side
> > effect one can also screw up the git master branch without
> > breaking the devel repository.
>
> Just a FYI: Using .Rbuildignore you can still add Makefile and other
> files to the repository that won't go into the package
> build/install/check/distro/.... This works regardless of Subversion
> of Git.
>
Right. But if you wanted to structure your repo like this:
- README
- package/
DESCRIPTION
etc
- otherstuff/
where the actual R package is in the 'package' directory, then .Rbuildignore
would not help.
This (I think) is what the original request was about.
Dan
> /Henrik
>
>
> >
> > I'm not a git guru, so maybe I'm missing something here, but it
> > seems feasible.
> >
> > Cheers,
> >
> > Moritz
> >
> > PS. Resent as it bounced from list before.
> >
> >
> > On 21 Feb 2014, at 17:00, Kasper Daniel Hansen
> > <kasperdanielhan...@gmail.com> wrote:
> >
> >> Thanks everyone, it was worth a question.
> >>
> >> Perhaps I will figure out how to use submodules.
> >>
> >> Kasper
> >>
> >>
> >> On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum
> >> <dtene...@fhcrc.org> wrote:
> >>
> >>>
> >>>
> >>> ----- Original Message -----
> >>>> From: "Sean Davis" <sdav...@mail.nih.gov>
> >>>> To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com>
> >>>> Cc: bioc-devel@r-project.org, "Dan Tenenbaum"
> >>>> <dtene...@fhcrc.org>
> >>>> Sent: Friday, February 21, 2014 7:08:21 AM
> >>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is
> >>>> available
> >>>>
> >>>>
> >>>>
> >>>> I doubt this is possible given the atomic nature of a git
> >>>> repository.
> >>>> You might look at using a second git repository and including
> >>>> the
> >>>> minfi package as a git submodule of that second repository.
> >>>> Then,
> >>>> you can keep things in sync, but the minfi repository remains
> >>>> atomic.
> >>>>
> >>>
> >>> I think Sean is correct.
> >>> Dan
> >>>
> >>>
> >>>> Sean
> >>>> On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" <
> >>>> kasperdanielhan...@gmail.com > wrote:
> >>>>
> >>>>
> >>>> Question: is it possible to synchronize a subset of a github
> >>>> repos?
> >>>> For
> >>>> minfi, I would like my github to be
> >>>>
> >>>> minfi-devel
> >>>> /minfi
> >>>> OTHER SCRIPTS
> >>>>
> >>>> where OTHER SCRIPTS could be notes or test scripts I use for
> >>>> internal
> >>>> development. I then only want to synchronize the
> >>>> minfi-devel/minfi
> >>>> directory with Bioc.
> >>>>
> >>>> Kasper
> >>>>
> >>>>
> >>>> On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen <
> >>>> kasperdanielhan...@gmail.com > wrote:
> >>>>
> >>>>> Seems to work for me; I have now populated my github repo.
> >>>>>
> >>>>> Thanks for the help,
> >>>>> Kasper
> >>>>>
> >>>>>
> >>>>> On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum <
> >>>>> dtene...@fhcrc.org
> >>>>>> wrote:
> >>>>>
> >>>>>> This should be fixed now.
> >>>>>> Thanks.
> >>>>>> Dan
> >>>>>>
> >>>>>>
> >>>>>> ----- Original Message -----
> >>>>>>> From: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com >
> >>>>>>> To: "Dan Tenenbaum" < dtene...@fhcrc.org >
> >>>>>>> Cc: bioc-devel@r-project.org
> >>>>>>> Sent: Saturday, February 8, 2014 7:07:44 PM
> >>>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is
> >>>>>>> available
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> Yes, see screenshot
> >>>>>>>
> >>>>>>>
> >>>>>>> (I do know I have a whitespace in front of the github url and
> >>>>>>> I
> >>>>>>> get a
> >>>>>>> note and I fixed it.
> >>>>>>>
> >>>>>>>
> >>>>>>> Kasper
> >>>>>>>
> >>>>>>>
> >>>>>>> On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum <
> >>>>>>> dtene...@fhcrc.org >
> >>>>>>> wrote:
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> https://github.com/kasperdanielhansen/minfi
> >>>>>>>
> >>>>>>>
> >>>>>>
> >>>>>
> >>>>>
> >>>>
> >>>> [[alternative HTML version deleted]]
> >>>>
> >>>> _______________________________________________
> >>>> Bioc-devel@r-project.org mailing list
> >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>>>
> >>>
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
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> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
> >
> >
> >
> > --
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> > Limited, a charity registered in England with number 1021457 and a
> > company registered in England with number 2742969, whose
> > registered
> > office is 215 Euston Road, London, NW1 2BE.
> >
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