----- Original Message ----- > From: "Dan Tenenbaum" <dtene...@fhcrc.org> > To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > Cc: bioc-devel@r-project.org, "Sean Davis" <sdav...@mail.nih.gov> > Sent: Friday, February 21, 2014 1:48:05 PM > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is available > > > > ----- Original Message ----- > > From: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > > To: "Dan Tenenbaum" <dtene...@fhcrc.org> > > Cc: "Sean Davis" <sdav...@mail.nih.gov>, bioc-devel@r-project.org > > Sent: Friday, February 21, 2014 1:26:10 PM > > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is > > available > > > > > > Just tried to add a completely empty github repository. Then I got > > an > > error message saying something like "the repos needs a master > > branch" (sorry, I did not copy and paste), when I tried to create > > the github-svn bridge. I then added a temporary file to the github > > branch and things worked. You may need to update HOWTO, although I > > am pretty sure I did not have to do this last time. > > > > This is a regression. Will fix. Thanks.
This should be fixed now. Thanks, Dan > Dan > > > > > > Kasper > > > > > > > > On Fri, Feb 21, 2014 at 12:00 PM, Kasper Daniel Hansen < > > kasperdanielhan...@gmail.com > wrote: > > > > > > > > Thanks everyone, it was worth a question. > > > > > > Perhaps I will figure out how to use submodules. > > > > > > Kasper > > > > > > > > > > > > On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum < > > dtene...@fhcrc.org > > > wrote: > > > > > > > > > > > > ----- Original Message ----- > > > From: "Sean Davis" < sdav...@mail.nih.gov > > > > To: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com > > > > Cc: bioc-devel@r-project.org , "Dan Tenenbaum" < > > > dtene...@fhcrc.org > > > > > > > Sent: Friday, February 21, 2014 7:08:21 AM > > > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is > > > available > > > > > > > > > > > > > > I doubt this is possible given the atomic nature of a git > > > repository. > > > You might look at using a second git repository and including the > > > minfi package as a git submodule of that second repository. Then, > > > you can keep things in sync, but the minfi repository remains > > > atomic. > > > > > > > I think Sean is correct. > > Dan > > > > > > > > > > > Sean > > > On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" < > > > kasperdanielhan...@gmail.com > wrote: > > > > > > > > > Question: is it possible to synchronize a subset of a github > > > repos? > > > For > > > minfi, I would like my github to be > > > > > > minfi-devel > > > /minfi > > > OTHER SCRIPTS > > > > > > where OTHER SCRIPTS could be notes or test scripts I use for > > > internal > > > development. I then only want to synchronize the > > > minfi-devel/minfi > > > directory with Bioc. > > > > > > Kasper > > > > > > > > > On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen < > > > kasperdanielhan...@gmail.com > wrote: > > > > > > > Seems to work for me; I have now populated my github repo. > > > > > > > > Thanks for the help, > > > > Kasper > > > > > > > > > > > > On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum < > > > > dtene...@fhcrc.org > > > > > wrote: > > > > > > > >> This should be fixed now. > > > >> Thanks. > > > >> Dan > > > >> > > > >> > > > >> ----- Original Message ----- > > > >> > From: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com > > > >> > > > > > >> > To: "Dan Tenenbaum" < dtene...@fhcrc.org > > > > >> > Cc: bioc-devel@r-project.org > > > >> > Sent: Saturday, February 8, 2014 7:07:44 PM > > > >> > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge > > > >> > is > > > >> > available > > > >> > > > > >> > > > > >> > > > > >> > Yes, see screenshot > > > >> > > > > >> > > > > >> > (I do know I have a whitespace in front of the github url > > > >> > and > > > >> > I > > > >> > get a > > > >> > note and I fixed it. > > > >> > > > > >> > > > > >> > Kasper > > > >> > > > > >> > > > > >> > On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum < > > > >> > dtene...@fhcrc.org > > > > >> > wrote: > > > >> > > > > >> > > > > >> > > > > >> > https://github.com/kasperdanielhansen/minfi > > > >> > > > > >> > > > > >> > > > > > > > > > > > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > > Bioc-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
