On Mon, May 12, 2014 at 1:32 AM, Moritz Gerstung <m...@sanger.ac.uk> wrote: > Hi all > > Following Kasper's idea from a couple of months ago: Would it be possible to > have the git-svn bridge synchronise a branch other than master? > > If so, one could use the git subtree command, > > git subtree split -P minfi -b biocsvn > > to create a branch 'biocsvn' only containing minfi directory [package]. This > branch would then be synchronised over the git-svn bridge. Changes in the > biocsvn branch can be merged back into the master branch and the correct > directory with > > git subtree merge -P minfi biocsvn > > I would also fancy a directory structure as Kasper suggested, where the > actual R package is a subdirectory. This would allow for placing extra files > such as README.md or Makefile into the root directory and other project > related data which shouldn't go into the package, but may be useful, in other > directories. As a side effect one can also screw up the git master branch > without breaking the devel repository.
Just a FYI: Using .Rbuildignore you can still add Makefile and other files to the repository that won't go into the package build/install/check/distro/.... This works regardless of Subversion of Git. /Henrik > > I'm not a git guru, so maybe I'm missing something here, but it seems > feasible. > > Cheers, > > Moritz > > PS. Resent as it bounced from list before. > > > On 21 Feb 2014, at 17:00, Kasper Daniel Hansen <kasperdanielhan...@gmail.com> > wrote: > >> Thanks everyone, it was worth a question. >> >> Perhaps I will figure out how to use submodules. >> >> Kasper >> >> >> On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: >> >>> >>> >>> ----- Original Message ----- >>>> From: "Sean Davis" <sdav...@mail.nih.gov> >>>> To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> >>>> Cc: bioc-devel@r-project.org, "Dan Tenenbaum" <dtene...@fhcrc.org> >>>> Sent: Friday, February 21, 2014 7:08:21 AM >>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is available >>>> >>>> >>>> >>>> I doubt this is possible given the atomic nature of a git repository. >>>> You might look at using a second git repository and including the >>>> minfi package as a git submodule of that second repository. Then, >>>> you can keep things in sync, but the minfi repository remains >>>> atomic. >>>> >>> >>> I think Sean is correct. >>> Dan >>> >>> >>>> Sean >>>> On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" < >>>> kasperdanielhan...@gmail.com > wrote: >>>> >>>> >>>> Question: is it possible to synchronize a subset of a github repos? >>>> For >>>> minfi, I would like my github to be >>>> >>>> minfi-devel >>>> /minfi >>>> OTHER SCRIPTS >>>> >>>> where OTHER SCRIPTS could be notes or test scripts I use for internal >>>> development. I then only want to synchronize the >>>> minfi-devel/minfi >>>> directory with Bioc. >>>> >>>> Kasper >>>> >>>> >>>> On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen < >>>> kasperdanielhan...@gmail.com > wrote: >>>> >>>>> Seems to work for me; I have now populated my github repo. >>>>> >>>>> Thanks for the help, >>>>> Kasper >>>>> >>>>> >>>>> On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum < dtene...@fhcrc.org >>>>>> wrote: >>>>> >>>>>> This should be fixed now. >>>>>> Thanks. >>>>>> Dan >>>>>> >>>>>> >>>>>> ----- Original Message ----- >>>>>>> From: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com > >>>>>>> To: "Dan Tenenbaum" < dtene...@fhcrc.org > >>>>>>> Cc: bioc-devel@r-project.org >>>>>>> Sent: Saturday, February 8, 2014 7:07:44 PM >>>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is >>>>>>> available >>>>>>> >>>>>>> >>>>>>> >>>>>>> Yes, see screenshot >>>>>>> >>>>>>> >>>>>>> (I do know I have a whitespace in front of the github url and I >>>>>>> get a >>>>>>> note and I fixed it. >>>>>>> >>>>>>> >>>>>>> Kasper >>>>>>> >>>>>>> >>>>>>> On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum < >>>>>>> dtene...@fhcrc.org > >>>>>>> wrote: >>>>>>> >>>>>>> >>>>>>> >>>>>>> https://github.com/kasperdanielhansen/minfi >>>>>>> >>>>>>> >>>>>> >>>>> >>>>> >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> _______________________________________________ >>>> Bioc-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>>> >>> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
