I am trying to re-create my git-svn bridges, but the website throws an error when I do it. Not sure why. I am trying to let svn win.
Best, Kasper On Mon, May 12, 2014 at 1:41 PM, Hector Corrada Bravo <hcorr...@gmail.com>wrote: > Another use case where this is useful is that newer packages may still need > to use the 'devel' BioC branch as something of a 'release' branch since a > natural release cycle is faster than the BioC cycle (I think of the BioC > devel branch that way for some packages). > > This way the master branch on git can be the 'no guarantees' branch, and > another branch on git is synchronized with the devel branch on svn. > > > On Mon, May 12, 2014 at 1:26 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > > > > > > > ----- Original Message ----- > > > From: "Henrik Bengtsson" <h...@biostat.ucsf.edu> > > > To: "Moritz Gerstung" <m...@sanger.ac.uk> > > > Cc: bioc-devel@r-project.org, "Sean Davis" <sdav...@mail.nih.gov> > > > Sent: Monday, May 12, 2014 10:19:15 AM > > > Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is available > > > > > > On Mon, May 12, 2014 at 1:32 AM, Moritz Gerstung <m...@sanger.ac.uk> > > > wrote: > > > > Hi all > > > > > > > > Following Kasper's idea from a couple of months ago: Would it be > > > > possible to have the git-svn bridge synchronise a branch other > > > > than master? > > > > > > > > If so, one could use the git subtree command, > > > > > > > > git subtree split -P minfi -b biocsvn > > > > > > > > to create a branch 'biocsvn' only containing minfi directory > > > > [package]. This branch would then be synchronised over the git-svn > > > > bridge. Changes in the biocsvn branch can be merged back into the > > > > master branch and the correct directory with > > > > > > > > git subtree merge -P minfi biocsvn > > > > > > > > I would also fancy a directory structure as Kasper suggested, where > > > > the actual R package is a subdirectory. This would allow for > > > > placing extra files such as README.md or Makefile into the root > > > > directory and other project related data which shouldn't go into > > > > the package, but may be useful, in other directories. As a side > > > > effect one can also screw up the git master branch without > > > > breaking the devel repository. > > > > > > Just a FYI: Using .Rbuildignore you can still add Makefile and other > > > files to the repository that won't go into the package > > > build/install/check/distro/.... This works regardless of Subversion > > > of Git. > > > > > > > > > Right. But if you wanted to structure your repo like this: > > > > - README > > - package/ > > DESCRIPTION > > etc > > - otherstuff/ > > > > where the actual R package is in the 'package' directory, then > > .Rbuildignore would not help. > > > > This (I think) is what the original request was about. > > > > Dan > > > > > > > > > /Henrik > > > > > > > > > > > > > > I'm not a git guru, so maybe I'm missing something here, but it > > > > seems feasible. > > > > > > > > Cheers, > > > > > > > > Moritz > > > > > > > > PS. Resent as it bounced from list before. > > > > > > > > > > > > On 21 Feb 2014, at 17:00, Kasper Daniel Hansen > > > > <kasperdanielhan...@gmail.com> wrote: > > > > > > > >> Thanks everyone, it was worth a question. > > > >> > > > >> Perhaps I will figure out how to use submodules. > > > >> > > > >> Kasper > > > >> > > > >> > > > >> On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum > > > >> <dtene...@fhcrc.org> wrote: > > > >> > > > >>> > > > >>> > > > >>> ----- Original Message ----- > > > >>>> From: "Sean Davis" <sdav...@mail.nih.gov> > > > >>>> To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > > > >>>> Cc: bioc-devel@r-project.org, "Dan Tenenbaum" > > > >>>> <dtene...@fhcrc.org> > > > >>>> Sent: Friday, February 21, 2014 7:08:21 AM > > > >>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is > > > >>>> available > > > >>>> > > > >>>> > > > >>>> > > > >>>> I doubt this is possible given the atomic nature of a git > > > >>>> repository. > > > >>>> You might look at using a second git repository and including > > > >>>> the > > > >>>> minfi package as a git submodule of that second repository. > > > >>>> Then, > > > >>>> you can keep things in sync, but the minfi repository remains > > > >>>> atomic. > > > >>>> > > > >>> > > > >>> I think Sean is correct. > > > >>> Dan > > > >>> > > > >>> > > > >>>> Sean > > > >>>> On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" < > > > >>>> kasperdanielhan...@gmail.com > wrote: > > > >>>> > > > >>>> > > > >>>> Question: is it possible to synchronize a subset of a github > > > >>>> repos? > > > >>>> For > > > >>>> minfi, I would like my github to be > > > >>>> > > > >>>> minfi-devel > > > >>>> /minfi > > > >>>> OTHER SCRIPTS > > > >>>> > > > >>>> where OTHER SCRIPTS could be notes or test scripts I use for > > > >>>> internal > > > >>>> development. I then only want to synchronize the > > > >>>> minfi-devel/minfi > > > >>>> directory with Bioc. > > > >>>> > > > >>>> Kasper > > > >>>> > > > >>>> > > > >>>> On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen < > > > >>>> kasperdanielhan...@gmail.com > wrote: > > > >>>> > > > >>>>> Seems to work for me; I have now populated my github repo. > > > >>>>> > > > >>>>> Thanks for the help, > > > >>>>> Kasper > > > >>>>> > > > >>>>> > > > >>>>> On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum < > > > >>>>> dtene...@fhcrc.org > > > >>>>>> wrote: > > > >>>>> > > > >>>>>> This should be fixed now. > > > >>>>>> Thanks. > > > >>>>>> Dan > > > >>>>>> > > > >>>>>> > > > >>>>>> ----- Original Message ----- > > > >>>>>>> From: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com > > > > >>>>>>> To: "Dan Tenenbaum" < dtene...@fhcrc.org > > > > >>>>>>> Cc: bioc-devel@r-project.org > > > >>>>>>> Sent: Saturday, February 8, 2014 7:07:44 PM > > > >>>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is > > > >>>>>>> available > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> Yes, see screenshot > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> (I do know I have a whitespace in front of the github url and > > > >>>>>>> I > > > >>>>>>> get a > > > >>>>>>> note and I fixed it. > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> Kasper > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum < > > > >>>>>>> dtene...@fhcrc.org > > > > >>>>>>> wrote: > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> > > > >>>>>>> https://github.com/kasperdanielhansen/minfi > > > >>>>>>> > > > >>>>>>> > > > >>>>>> > > > >>>>> > > > >>>>> > > > >>>> > > > >>>> [[alternative HTML version deleted]] > > > >>>> > > > >>>> _______________________________________________ > > > >>>> Bioc-devel@r-project.org mailing list > > > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > >>>> > > > >>> > > > >> > > > >> [[alternative HTML version deleted]] > > > >> > > > >> _______________________________________________ > > > >> Bioc-devel@r-project.org mailing list > > > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > > > > > > > > > > > > > -- > > > > The Wellcome Trust Sanger Institute is operated by Genome Research > > > > Limited, a charity registered in England with number 1021457 and a > > > > company registered in England with number 2742969, whose > > > > registered > > > > office is 215 Euston Road, London, NW1 2BE. > > > > > > > > _______________________________________________ > > > > Bioc-devel@r-project.org mailing list > > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > _______________________________________________ > > > Bioc-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
