Hi Moritz, ----- Original Message ----- > From: "Moritz Gerstung" <m...@sanger.ac.uk> > To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > Cc: "Dan Tenenbaum" <dtene...@fhcrc.org>, bioc-devel@r-project.org, "Sean > Davis" <sdav...@mail.nih.gov> > Sent: Monday, May 12, 2014 1:32:38 AM > Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is available > > Hi all > > Following Kasper's idea from a couple of months ago: Would it be > possible to have the git-svn bridge synchronise a branch other than > master? > > If so, one could use the git subtree command, > > git subtree split -P minfi -b biocsvn > > to create a branch 'biocsvn' only containing minfi directory > [package]. This branch would then be synchronised over the git-svn > bridge. Changes in the biocsvn branch can be merged back into the > master branch and the correct directory with > > git subtree merge -P minfi biocsvn > > I would also fancy a directory structure as Kasper suggested, where > the actual R package is a subdirectory. This would allow for placing > extra files such as README.md or Makefile into the root directory > and other project related data which shouldn't go into the package, > but may be useful, in other directories. As a side effect one can > also screw up the git master branch without breaking the devel > repository. > > I'm not a git guru, so maybe I'm missing something here, but it seems > feasible. >
It does seem doable. It may take a while before I have time to implement this. Thanks. Dan > Cheers, > > Moritz > > PS. Resent as it bounced from list before. > > > On 21 Feb 2014, at 17:00, Kasper Daniel Hansen > <kasperdanielhan...@gmail.com> wrote: > > > Thanks everyone, it was worth a question. > > > > Perhaps I will figure out how to use submodules. > > > > Kasper > > > > > > On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum > > <dtene...@fhcrc.org> wrote: > > > >> > >> > >> ----- Original Message ----- > >>> From: "Sean Davis" <sdav...@mail.nih.gov> > >>> To: "Kasper Daniel Hansen" <kasperdanielhan...@gmail.com> > >>> Cc: bioc-devel@r-project.org, "Dan Tenenbaum" > >>> <dtene...@fhcrc.org> > >>> Sent: Friday, February 21, 2014 7:08:21 AM > >>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is > >>> available > >>> > >>> > >>> > >>> I doubt this is possible given the atomic nature of a git > >>> repository. > >>> You might look at using a second git repository and including the > >>> minfi package as a git submodule of that second repository. Then, > >>> you can keep things in sync, but the minfi repository remains > >>> atomic. > >>> > >> > >> I think Sean is correct. > >> Dan > >> > >> > >>> Sean > >>> On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" < > >>> kasperdanielhan...@gmail.com > wrote: > >>> > >>> > >>> Question: is it possible to synchronize a subset of a github > >>> repos? > >>> For > >>> minfi, I would like my github to be > >>> > >>> minfi-devel > >>> /minfi > >>> OTHER SCRIPTS > >>> > >>> where OTHER SCRIPTS could be notes or test scripts I use for > >>> internal > >>> development. I then only want to synchronize the > >>> minfi-devel/minfi > >>> directory with Bioc. > >>> > >>> Kasper > >>> > >>> > >>> On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen < > >>> kasperdanielhan...@gmail.com > wrote: > >>> > >>>> Seems to work for me; I have now populated my github repo. > >>>> > >>>> Thanks for the help, > >>>> Kasper > >>>> > >>>> > >>>> On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum < > >>>> dtene...@fhcrc.org > >>>>> wrote: > >>>> > >>>>> This should be fixed now. > >>>>> Thanks. > >>>>> Dan > >>>>> > >>>>> > >>>>> ----- Original Message ----- > >>>>>> From: "Kasper Daniel Hansen" < kasperdanielhan...@gmail.com > > >>>>>> To: "Dan Tenenbaum" < dtene...@fhcrc.org > > >>>>>> Cc: bioc-devel@r-project.org > >>>>>> Sent: Saturday, February 8, 2014 7:07:44 PM > >>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is > >>>>>> available > >>>>>> > >>>>>> > >>>>>> > >>>>>> Yes, see screenshot > >>>>>> > >>>>>> > >>>>>> (I do know I have a whitespace in front of the github url and > >>>>>> I > >>>>>> get a > >>>>>> note and I fixed it. > >>>>>> > >>>>>> > >>>>>> Kasper > >>>>>> > >>>>>> > >>>>>> On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum < > >>>>>> dtene...@fhcrc.org > > >>>>>> wrote: > >>>>>> > >>>>>> > >>>>>> > >>>>>> https://github.com/kasperdanielhansen/minfi > >>>>>> > >>>>>> > >>>>> > >>>> > >>>> > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> _______________________________________________ > >>> Bioc-devel@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >>> > >> > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. > _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
