Hello Hong, I am not Ted either. Would you provide a little more information: what directory are you in?
Best regards, Bridget On Mon, Sep 23, 2019 at 9:46 PM Hong Guan [email protected] [umls-similarity] < [email protected]> wrote: > > > This line > $MYSQL_HOME/bin/mysql -u $user -p$password $db_name < mysql_tables.sql >> > mysql.log 2>&1 > reads the mysql_tables.sql, but I don't see it. > > Thanks, > Hong > > On Mon, Sep 23, 2019 at 2:03 PM Juliana M Destro [email protected] > [umls-similarity] <[email protected]> wrote: > >> >> >> I'm not Ted but I think I can help you :-) >> >> You can get the load scripts in UMLS page: >> >> https://www.nlm.nih.gov/research/umls/implementation_resources/scripts/index.html >> >> On Mon, Sep 23, 2019 at 5:17 PM Hong Guan [email protected] >> [umls-similarity] <[email protected]> wrote: >> >>> >>> >>> Hi Ted, >>> >>> I am stuck at Stage 5 Step 3 C. When I ran ./populate_mysql_db.sh, I got >>> an error message saying "populate_mysql_db.sh: line 45: mysql_tables.sql: >>> No such file or directory". I don't see mysql_tables.sql in the UMLS/ >>> directory and its sub-directories. What should I do? >>> >>> Thanks, >>> Hong >>> >>> On Tue, Sep 17, 2019 at 2:13 PM Ted Pedersen [email protected] >>> [umls-similarity] <[email protected]> wrote: >>> >>>> >>>> >>>> >>>> It looks like some Perl modules are missing. These instructions will >>>> help install those! >>>> >>>> https://metacpan.org/source/BTMCINNES/UMLS-Interface-1.51/INSTALL >>>> >>>> On Tue, Sep 17, 2019 at 2:36 PM Hong Guan [email protected] >>>> [umls-similarity] <[email protected]> wrote: >>>> >>>>> >>>>> >>>>> I install UMLS and MySQL 5.7. The error prompt says >>>>> >>>>> Warning: prerequisite DBD::mysql 0 not found. >>>>>> Warning: prerequisite DBI 0 not found. >>>>>> Warning: prerequisite Digest::SHA1 2.12 not found. >>>>>> Generating a Unix-style Makefile >>>>>> Writing Makefile for UMLS::Interface >>>>>> Writing MYMETA.yml and MYMETA.json >>>>> >>>>> >>>>> Looks like it recognizes UMLS but not MySQL. What do I do now? >>>>> >>>>> Thanks, >>>>> >>>>> On Mon, Sep 16, 2019 at 11:04 AM Ted Pedersen [email protected] >>>>> [umls-similarity] <[email protected]> wrote: >>>>> >>>>>> >>>>>> >>>>>> The National Library of Medicine has some pretty good instructions on >>>>>> how to install UMLS. >>>>>> >>>>>> https://www..nlm.nih.gov/research/umls/quickstart.html >>>>>> <https://www.nlm.nih.gov/research/umls/quickstart.html> >>>>>> >>>>>> On Mon, Sep 16, 2019 at 1:00 PM [email protected] [umls-similarity] < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> >>>>>>> >>>>>>> I am new to this package. Can anyone tell me how I >>>>>>> install UMLS-Similarity from scratch? The system I am using is Ubuntu >>>>>>> 18.04. >>>>>>> >>>>>>> It seems that I need to install UMLS and MySQL before installing >>>>>>> UMLS-Similarity. Am I correct? If that is the case, how do I install >>>>>>> UMLS? >>>>>>> I do know how to install MySQL. >>>>>>> >>>>>>> >>>>> >>>>> -- >>>>> >>>>> Hong Guan >>>>> >>>>> Research Assistant, Biomedical Informatics >>>>> >>>>> College of Health Solutions >>>>> >>>>> Arizona State University >>>>> >>>>> >>> >>> -- >>> >>> Hong Guan, MS >>> >>> Doctoral Student, Research Assistant >>> College of Health Solutions, Arizona State University >>> >>> > > -- > > Hong Guan, MS > > Doctoral Student, Research Assistant > College of Health Solutions, Arizona State University > > >
