This line $MYSQL_HOME/bin/mysql -u $user -p$password $db_name < mysql_tables.sql >> mysql.log 2>&1 reads the mysql_tables.sql, but I don't see it.
Thanks, Hong On Mon, Sep 23, 2019 at 2:03 PM Juliana M Destro [email protected] [umls-similarity] <[email protected]> wrote: > > > I'm not Ted but I think I can help you :-) > > You can get the load scripts in UMLS page: > > https://www.nlm.nih.gov/research/umls/implementation_resources/scripts/index.html > > On Mon, Sep 23, 2019 at 5:17 PM Hong Guan [email protected] > [umls-similarity] <[email protected]> wrote: > >> >> >> Hi Ted, >> >> I am stuck at Stage 5 Step 3 C. When I ran ./populate_mysql_db.sh, I got >> an error message saying "populate_mysql_db.sh: line 45: mysql_tables.sql: >> No such file or directory". I don't see mysql_tables.sql in the UMLS/ >> directory and its sub-directories. What should I do? >> >> Thanks, >> Hong >> >> On Tue, Sep 17, 2019 at 2:13 PM Ted Pedersen [email protected] >> [umls-similarity] <[email protected]> wrote: >> >>> >>> >>> >>> It looks like some Perl modules are missing. These instructions will >>> help install those! >>> >>> https://metacpan.org/source/BTMCINNES/UMLS-Interface-1.51/INSTALL >>> >>> On Tue, Sep 17, 2019 at 2:36 PM Hong Guan [email protected] >>> [umls-similarity] <[email protected]> wrote: >>> >>>> >>>> >>>> I install UMLS and MySQL 5.7. The error prompt says >>>> >>>> Warning: prerequisite DBD::mysql 0 not found. >>>>> Warning: prerequisite DBI 0 not found. >>>>> Warning: prerequisite Digest::SHA1 2.12 not found. >>>>> Generating a Unix-style Makefile >>>>> Writing Makefile for UMLS::Interface >>>>> Writing MYMETA.yml and MYMETA.json >>>> >>>> >>>> Looks like it recognizes UMLS but not MySQL. What do I do now? >>>> >>>> Thanks, >>>> >>>> On Mon, Sep 16, 2019 at 11:04 AM Ted Pedersen [email protected] >>>> [umls-similarity] <[email protected]> wrote: >>>> >>>>> >>>>> >>>>> The National Library of Medicine has some pretty good instructions on >>>>> how to install UMLS. >>>>> >>>>> https://www..nlm.nih.gov/research/umls/quickstart.html >>>>> <https://www.nlm.nih.gov/research/umls/quickstart.html> >>>>> >>>>> On Mon, Sep 16, 2019 at 1:00 PM [email protected] [umls-similarity] < >>>>> [email protected]> wrote: >>>>> >>>>>> >>>>>> >>>>>> I am new to this package. Can anyone tell me how I >>>>>> install UMLS-Similarity from scratch? The system I am using is Ubuntu >>>>>> 18.04. >>>>>> >>>>>> It seems that I need to install UMLS and MySQL before installing >>>>>> UMLS-Similarity. Am I correct? If that is the case, how do I install >>>>>> UMLS? >>>>>> I do know how to install MySQL. >>>>>> >>>>>> >>>> >>>> -- >>>> >>>> Hong Guan >>>> >>>> Research Assistant, Biomedical Informatics >>>> >>>> College of Health Solutions >>>> >>>> Arizona State University >>>> >>>> >> >> -- >> >> Hong Guan, MS >> >> Doctoral Student, Research Assistant >> College of Health Solutions, Arizona State University >> >> > -- Hong Guan, MS Doctoral Student, Research Assistant College of Health Solutions, Arizona State University
