I'm not Ted but I think I can help you :-) You can get the load scripts in UMLS page: https://www.nlm.nih.gov/research/umls/implementation_resources/scripts/index.html
On Mon, Sep 23, 2019 at 5:17 PM Hong Guan [email protected] [umls-similarity] < [email protected]> wrote: > > > Hi Ted, > > I am stuck at Stage 5 Step 3 C. When I ran ./populate_mysql_db.sh, I got > an error message saying "populate_mysql_db.sh: line 45: mysql_tables.sql: > No such file or directory". I don't see mysql_tables.sql in the UMLS/ > directory and its sub-directories. What should I do? > > Thanks, > Hong > > On Tue, Sep 17, 2019 at 2:13 PM Ted Pedersen [email protected] > [umls-similarity] <[email protected]> wrote: > >> >> >> >> It looks like some Perl modules are missing. These instructions will help >> install those! >> >> https://metacpan.org/source/BTMCINNES/UMLS-Interface-1.51/INSTALL >> >> On Tue, Sep 17, 2019 at 2:36 PM Hong Guan [email protected] >> [umls-similarity] <[email protected]> wrote: >> >>> >>> >>> I install UMLS and MySQL 5.7. The error prompt says >>> >>> Warning: prerequisite DBD::mysql 0 not found. >>>> Warning: prerequisite DBI 0 not found. >>>> Warning: prerequisite Digest::SHA1 2.12 not found. >>>> Generating a Unix-style Makefile >>>> Writing Makefile for UMLS::Interface >>>> Writing MYMETA.yml and MYMETA.json >>> >>> >>> Looks like it recognizes UMLS but not MySQL. What do I do now? >>> >>> Thanks, >>> >>> On Mon, Sep 16, 2019 at 11:04 AM Ted Pedersen [email protected] >>> [umls-similarity] <[email protected]> wrote: >>> >>>> >>>> >>>> The National Library of Medicine has some pretty good instructions on >>>> how to install UMLS. >>>> >>>> https://www..nlm.nih.gov/research/umls/quickstart.html >>>> <https://www.nlm.nih.gov/research/umls/quickstart.html> >>>> >>>> On Mon, Sep 16, 2019 at 1:00 PM [email protected] [umls-similarity] < >>>> [email protected]> wrote: >>>> >>>>> >>>>> >>>>> I am new to this package. Can anyone tell me how I >>>>> install UMLS-Similarity from scratch? The system I am using is Ubuntu >>>>> 18.04. >>>>> >>>>> It seems that I need to install UMLS and MySQL before installing >>>>> UMLS-Similarity. Am I correct? If that is the case, how do I install UMLS? >>>>> I do know how to install MySQL. >>>>> >>>>> >>> >>> -- >>> >>> Hong Guan >>> >>> Research Assistant, Biomedical Informatics >>> >>> College of Health Solutions >>> >>> Arizona State University >>> >>> > > -- > > Hong Guan, MS > > Doctoral Student, Research Assistant > College of Health Solutions, Arizona State University > > >
