Hi Ted, I am stuck at Stage 5 Step 3 C. When I ran ./populate_mysql_db.sh, I got an error message saying "populate_mysql_db.sh: line 45: mysql_tables.sql: No such file or directory". I don't see mysql_tables.sql in the UMLS/ directory and its sub-directories. What should I do?
Thanks, Hong On Tue, Sep 17, 2019 at 2:13 PM Ted Pedersen [email protected] [umls-similarity] <[email protected]> wrote: > > > > It looks like some Perl modules are missing. These instructions will help > install those! > > https://metacpan.org/source/BTMCINNES/UMLS-Interface-1.51/INSTALL > > On Tue, Sep 17, 2019 at 2:36 PM Hong Guan [email protected] > [umls-similarity] <[email protected]> wrote: > >> >> >> I install UMLS and MySQL 5.7. The error prompt says >> >> Warning: prerequisite DBD::mysql 0 not found. >>> Warning: prerequisite DBI 0 not found. >>> Warning: prerequisite Digest::SHA1 2.12 not found. >>> Generating a Unix-style Makefile >>> Writing Makefile for UMLS::Interface >>> Writing MYMETA.yml and MYMETA.json >> >> >> Looks like it recognizes UMLS but not MySQL. What do I do now? >> >> Thanks, >> >> On Mon, Sep 16, 2019 at 11:04 AM Ted Pedersen [email protected] >> [umls-similarity] <[email protected]> wrote: >> >>> >>> >>> The National Library of Medicine has some pretty good instructions on >>> how to install UMLS. >>> >>> https://www..nlm.nih.gov/research/umls/quickstart.html >>> <https://www.nlm.nih.gov/research/umls/quickstart.html> >>> >>> On Mon, Sep 16, 2019 at 1:00 PM [email protected] [umls-similarity] < >>> [email protected]> wrote: >>> >>>> >>>> >>>> I am new to this package. Can anyone tell me how I >>>> install UMLS-Similarity from scratch? The system I am using is Ubuntu >>>> 18.04. >>>> >>>> It seems that I need to install UMLS and MySQL before installing >>>> UMLS-Similarity. Am I correct? If that is the case, how do I install UMLS? >>>> I do know how to install MySQL. >>>> >>>> >> >> -- >> >> Hong Guan >> >> Research Assistant, Biomedical Informatics >> >> College of Health Solutions >> >> Arizona State University >> >> > -- Hong Guan, MS Doctoral Student, Research Assistant College of Health Solutions, Arizona State University
