RE: [PyMOL] biological unit

u all! Best, Zheng -Original Message- From: Jacob Corn [mailto:jc...@berkeley.edu] Sent: Tuesday, May 23, 2006 11:12 AM To: proteiny...@gmail.com Subject: Re: [PyMOL] biological unit Hi Zheng, Sorry it's taken me a while to get back to you. I'm not entirely clear on your question. Pr

RE: [PyMOL] biological unit

ubject: Re: [PyMOL] biological unit Hi Surendra, Just to make sure, are you downloading the "biological unit" PDB from RCSB? That should be a 5MB gzipped file. The normal PDB for 1c8e does not contain coordinates for the biological unit (which you need to use split_states); only a mono

Re: [PyMOL] biological unit

Hi Surendra, Just to make sure, are you downloading the "biological unit" PDB from RCSB? That should be a 5MB gzipped file. The normal PDB for 1c8e does not contain coordinates for the biological unit (which you need to use split_states); only a monomer and then info on crystal symmetry. If you

Re: [PyMOL] biological unit

Hi Surendra, Perhaps you could tell us a little more about the problems you are having? Does the PDB file load? Does the error occur after trying to split_stats? What is that error? I'm assuming that you are trying this on the 1c8e pdb? Or is there another specific pdb that you're having proble

Re: [PyMOL] biological unit

Hi Tskerk, thanks for your message but it is not working. Finally after some googling i found the original script. Here is the script from link http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/2623.html split_states 1c8e delete 1c8e zoom spectrum b hide lines set c

Re: [PyMOL] biological unit

Hi Surendra, split_states is a native Pymol command. If you download from the PDB the "biological unit" coordinate file, you can show it using split_states OBJECT Cheers, Tsjerk On 5/18/06, surendra negi wrote: Hello pymol, Is it possible to create biological unit of a molecule using pym

[PyMOL] biological unit

Hello pymol, Is it possible to create biological unit of a molecule using pymol? if yes then how. How can I use symmetry command in pymol. I read a mail long back related to split_states to create created following images from a single molecule http://delsci.com/img/1c8e.jpg http://delsci.com/

RE: [PyMOL] biological unit question

G5 85 seconds to render... Cheers, Warren > -Original Message- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Todd Geders > Sent: Friday, April 02, 2004 10:28 AM > To: Ann Mullin > Cc: pymol-users@lists.sour

Re: [PyMOL] biological unit question

Command line equivalent is the following: set all_states,1 On Fri, 2004-04-02 at 11:38, Ann Mullin wrote: > Hello, > > I am also interested in being able to display an entire virus capsid. > > Ny new question regards Todd's reply to check Movie->Show All States. > > I run Native PyMOL for Mac

[PyMOL] biological unit question

Hello, I am also interested in being able to display an entire virus capsid. Ny new question regards Todd's reply to check Movie->Show All States. I run Native PyMOL for MacOSX on a G5, and I have never been able to access the preferences for PyMOL, the option is greyed out on the file menu.