Hi Surendra,
Perhaps you could tell us a little more about the problems you are having? Does the PDB file load? Does the error occur after trying to split_stats? What is that error? I'm assuming that you are trying this on the 1c8e pdb? Or is there another specific pdb that you're having problems with?

surendra negi wrote:
Hi Tskerk,
thanks for your message but it is not working. Finally
after some googling i found the original script. Here is the script from link http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/2623.html

    split_states 1c8e
    delete 1c8e
    zoom
    spectrum b
    hide lines
    set cartoon_sampling,3
    show cartoon
    bg_color grey70
    set hash_max, 150
    ray
    orient
    zoom complete=1
    ray

but still no luck! any suggestions.
thanks
surnedra

--- Tsjerk Wassenaar <tsje...@gmail.com> wrote:


Hi Surendra,

split_states is a native Pymol command. If you
download from the PDB the
"biological unit" coordinate file, you can show it
using split_states OBJECT

Cheers,

Tsjerk

On 5/18/06, surendra negi <negi...@yahoo.com> wrote:

Hello pymol,

 Is it possible to create biological unit of a
molecule using pymol? if yes then how. How can I

use

symmetry command in pymol. I read a mail long back
related to
split_states to create created following images

from a

single molecule

http://delsci.com/img/1c8e.jpg
http://delsci.com/img/1c8e-screen.jpg

Anybody has the script. If yes then please mail

me.

thanks
sn

__________________________________________________
Do You Yahoo!?
Tired of spam?  Yahoo! Mail has the best spam

protection around

http://mail.yahoo.com




-------------------------------------------------------

Using Tomcat but need to do more? Need to support

web services, security?

Get stuff done quickly with pre-integrated

technology to make your job

easier
Download IBM WebSphere Application Server v.1.0.1

based on Apache Geronimo

http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642

_______________________________________________
PyMOL-users mailing list
PyMOL-users@lists.sourceforge.net


https://lists.sourceforge.net/lists/listinfo/pymol-users



--

Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology
Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336




__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com

-------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
PyMOL-users mailing list
PyMOL-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/pymol-users

--
Jacob Corn
The Berger Lab
UC Berkeley - Molecular and Cell Biology
jc...@uclink.berkeley.edu
phone: 510-643-8893
fax: 510-643-9290

Reply via email to