Dear all, I want to create a movie of a virus capsid from N biological unit pdb files (N frames). After loading and splitting the first pdb file, how to load the remaining pdb files and put them in different states/frames?
Is there any optional control on the command, 'split_states', e.g. splitting to a certain state? Thanks a lot! Zheng -----Original Message----- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Jacob Corn Sent: Sunday, May 21, 2006 1:58 AM To: surendra negi Cc: PyMOL-users@lists.sourceforge.net Subject: Re: [PyMOL] biological unit Hi Surendra, Just to make sure, are you downloading the "biological unit" PDB from RCSB? That should be a 5MB gzipped file. The normal PDB for 1c8e does not contain coordinates for the biological unit (which you need to use split_states); only a monomer and then info on crystal symmetry. If you go to a PDB entry at the RCSB and open up the "Download Files" menu, choose the last option in the list, "Biological Unit Coordinates". Here is a direct link to the biological unit for 1c8e http://www.rcsb.org/pdb/files/1c8e.pdb1.gz The normal PDB is http://www.rcsb.org/pdb/files/1c8e.pdb.gz Jacob surendra negi wrote: > Ji Jacob, > I am trying to produce the results shown in > > http://delsci.com/img/1c8e.jpg > http://delsci.com/img/1c8e-screen.jpg > > using > > >> split_states 1c8e >> delete 1c8e >> zoom >> spectrum b >> hide lines >> set cartoon_sampling,3 >> show cartoon >> bg_color grey70 >> set hash_max, 150 >> ray >> orient >> zoom complete=1 >> ray > > script in my linux machine but is is not working and > also giving no error message. It is just showing me > single molecule. Do you have any suggestions. > thanks > surendra > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com ------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
